Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq6 122 7e-26 seq1 122 7e-26 seq8 114 1e-23 seq10 93.3 4e-17 seq5 93.3 4e-17 seq9 84.2 2e-14 seq7 80.6 2e-13 >seq6 Length=78779235 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 34525129 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 34525188 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 34525189 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 34525248 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 34525249 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 34525288 >seq1 Length=132393784 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 54555640 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 54555581 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 54555580 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 54555521 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 54555520 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 54555481 Score = 104 bits (114), Expect = 2e-20 Identities = 121/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||| ||| || |||||| ||| | ||| | ||| ||| ||||||| ||||| || Sbjct 54563245 CGAGTTACAGCCTGAAATCCGAACTGAGGATG-AGTTTTTGGAGTTAGCTCACCCTCACG 54563187 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || | || |||| ||| |||||||| |||| || | || |||||||| || Sbjct 54563186 GGATCACGACCCTTTGTCCAGCCCATTGTAGTACGTTTGTCGTCCAGGGCATAAGGGGCA 54563127 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||||||| ||||||||||||| || |||| Sbjct 54563126 TGATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 54563086 >seq8 Length=131339754 Score = 114 bits (126), Expect = 1e-23 Identities = 122/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 96170904 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 96170846 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| ||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 96170845 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 96170786 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||| | || | |||| Sbjct 96170785 GCGGACTTGACGTCATCCCCACCTTCCTTCAGTATCTCAC 96170746 >seq10 Length=73452336 Score = 93.3 bits (102), Expect = 4e-17 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| |||| |||||||| |||||| ||||||||||||||||||| Sbjct 63180157 CCATTGTAGCACGTGTGTGGCCCAGCCCATAAGAGCCATGCGGACTTGACGTCATCCCCA 63180216 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||| || | |||| Sbjct 63180217 CCTTCCTCCAGTATCTCAC 63180235 Score = 86.0 bits (94), Expect = 5e-15 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||| || ||||||||| ||| | | ||| ||| ||| ||| |||| | Sbjct 62456720 CGAGTTGTAGCCTACAATCCAAACTGAGGACGAGTTTTTGGAGTTATCTCACCCTTATAG 62456661 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | | |||| ||| | |||||| | ||||||| |||| |||||||| ||| Sbjct 62456660 GATTACAACCCTTTGTCCCTCCCATTGAAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 62456601 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||| ||||||||||||| || |||| Sbjct 62456600 AATGACTTGACGTCATCCTCACCTTCCTCCGGCTTTTCAC 62456561 >seq5 Length=131469567 Score = 93.3 bits (102), Expect = 4e-17 Identities = 92/118 (78%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 37 TTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGT 96 |||||| ||| ||||| ||| | | | || ||| ||| | || ||||| |||| Sbjct 62925894 TTCTGG-ATTCGCTCCGCCTTACAGCCTTGCTTCCCATTGTCATTGCCGTTGTAGCACGT 62925952 Query 97 GTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGT 154 ||| |||| ||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 62925953 GTGTGGCCCAGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGT 62926010 Score = 82.4 bits (90), Expect = 6e-14 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 102 GCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||| ||||||||||||||| |||||||||||||||||||||||||||| || | |||| Sbjct 62926015 GCCCAGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 62926074 >seq9 Length=68543460 Score = 84.2 bits (92), Expect = 2e-14 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 ||||| || || |||| |||| |||||||||| |||| ||||||||||||||||||| Sbjct 46988508 CCATTATAGCACATGTGTGGCCCAGCCCATAAGGGTCATGCGGACTTGACGTCATCCCCA 46988449 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||| || | |||| Sbjct 46988448 CCTTCCTCCAGTATCTCAC 46988430 >seq7 Length=151357931 Score = 80.6 bits (88), Expect = 2e-13 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| |||| ||||| || ||||| |||||||||||||||||| Sbjct 134495557 CCATTGTAGCACGTGTGTCGCCCAGGGCATAAAGGGCATGATGACTTGACGTCATCCCCA 134495498 Query 143 CCTTCCTCCGGTTTGTCAC 161 || |||||||| || |||| Sbjct 134495497 CCCTCCTCCGGCTTATCAC 134495479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415952478240