Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq6 172 9e-41 seq8 113 7e-23 seq10 100 5e-19 seq1 96.9 6e-18 seq2 86.0 1e-14 seq3 78.8 2e-12 seq7 73.4 7e-11 >seq6 Length=78779235 Score = 172 bits (190), Expect = 9e-41 Identities = 209/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| || Sbjct 34525682 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTC 34525741 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 34525742 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 34525801 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | |||||| Sbjct 34525802 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAA 34525861 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||| Sbjct 34525862 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 34525921 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||||||| || Sbjct 34525922 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 34525966 >seq8 Length=131339754 Score = 113 bits (124), Expect = 7e-23 Identities = 168/236 (71%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 55 TGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTC 114 ||| |||||| |||| ||||||| |||||||| ||||||||| |||||| | ||||| Sbjct 96564734 TGGCGTTCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTG 96564675 Query 115 CAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGA-GCCCATAGTTTTCACA 173 |||||||| || ||||||| ||| || ||| | | | |||||| Sbjct 96564674 TCTCACTCAAGTGAATTGGTTTCAAGAGCATTCTGCCAGTTTTTGGCGAC---TTTCACT 96564618 Query 174 TCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCC 233 | || | | |||||||| |||||||||||||| | | ||| | ||| |||||| Sbjct 96564617 TTCAACCCGATTCACCGCCTACGTGCCCTTTACACCCAGTCATTCCAAAGAACACTTGCC 96564558 Query 234 ACCTA----CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 || ||| |||||||| ||||||||||| ||||| ||| ||||| |||||| Sbjct 96564557 CCCCCTCCCCGTCTTACCGCGACTGCTGGCACGAAGTTACCCGGGGCTTCTTCCTC 96564502 >seq10 Length=73452336 Score = 100 bits (110), Expect = 5e-19 Identities = 193/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | |||||| || || ||| |||||||| || Sbjct 62454316 GCTTTCGTCTCTCAGTGTCAGTGCTGGCCCAGCAGAGTGCTTTTGCCGTTGGTGTTCTTC 62454257 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||| | | || || | | |||| | Sbjct 62454256 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTACCTCTACCCCTACCGTACTCCAA 62454197 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | ||| | ||||||||||| | || | | ||||| Sbjct 62454196 CTTGGTAGTTTCCACTGCCTGTCCAGGGTTGAGCCCTAGGAATTGATGGCAGACTTAAAA 62454137 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| |||||| ||||| | || ||||||||||||| ||| | ||| Sbjct 62454136 AGCCACCTACAGATGCTTTACGTCCAATCATTCTGGATAACGCTTGCATCCTCTATCTTA 62454077 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| |||||||||| ||||||| ||||||||||||| || Sbjct 62454076 TCGCAGCTGCTGGCATAGTGTTAGCCTATGCTTATTCCTCAGATA 62454032 Score = 100 bits (110), Expect = 5e-19 Identities = 193/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | |||||| || || ||| |||||||| || Sbjct 62456167 GCTTTCGTCTCTCAGTGTCAGTGCTGGCCCAGCAGAGTGCTTTTGCCGTTGGTGTTCTTC 62456108 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||| | | || || | | |||| | Sbjct 62456107 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTACCTCTACCCCTACCGTACTCCAA 62456048 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | ||| | ||||||||||| | || | | ||||| Sbjct 62456047 CTTGGTAGTTTCCACTGCCTGTCCAGGGTTGAGCCCTAGGAATTGATGGCAGACTTAAAA 62455988 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| |||||| ||||| | || ||||||||||||| ||| | ||| Sbjct 62455987 AGCCACCTACAGATGCTTTACGTCCAATCATTCTGGATAACGCTTGCATCCTCTATCTTA 62455928 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| |||||||||| ||||||| ||||||||||||| || Sbjct 62455927 TCGCAGCTGCTGGCATAGTGTTAGCCTATGCTTATTCCTCAGATA 62455883 >seq1 Length=132393784 Score = 96.9 bits (106), Expect = 6e-18 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| |||||| | |||| ||||||||||| ||| || ||||| Sbjct 54554863 CCACCTACAGACGCTTTACGCCCAATCATTCCGAATAACGCTTGCATCCTCTGTCTTACC 54554804 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 | |||||||||||| |||||| || ||||||||||||| || Sbjct 54554803 GTGGCTGCTGGCACAGAGTTAGTCGATGCTTATTCCTCAGATA 54554761 Score = 75.2 bits (82), Expect = 2e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 224 AACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 ||| |||||| || ||| |||||||||||||||||||| ||||||||| ||||| |||| Sbjct 33831135 AACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCC 33831076 Query 284 T 284 | Sbjct 33831075 T 33831075 >seq2 Length=84732013 Score = 86.0 bits (94), Expect = 1e-14 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69 ATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAA 128 || ||||||||||||||| || || | |||||| | || || | | |||| | Sbjct 2548589 ATCTCTACGCATTTCACCACTCCATCGGAAATTCCCTCTACCCCTACCGTACTCCGGCTT 2548648 Query 129 AACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCC 188 |||||| | ||| | |||||||||| | ||| || |||||| | Sbjct 2548649 TGTAGTTTCCACCGCATGTCCAGGGTTGAGCCTTGGGATTTGACGGTGGACTTGTAAAGC 2548708 Query 189 CGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCG 248 | |||||| | |||||| |||||| | ||||||||| |||||| ||| || |||||| Sbjct 2548709 CACCTACAAACGCTTTACGCCCAATCATTCCGGATAATGCTTGCATCCTTTGTCTTACCG 2548768 Query 249 CGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 || || |||||| ||||||| ||||||| ||||| || Sbjct 2548769 CGACTACTGGCATAGAGTTAGCAAATGCTTATTTCTCAGATA 2548810 >seq3 Length=113259003 Score = 78.8 bits (86), Expect = 2e-12 Identities = 79/103 (77%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||| Sbjct 15967179 CCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTAAT 15967238 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| |||||||||| ||| | | | |||||||| |||| || Sbjct 15967239 GCGTCTGCTGGCACAGAGTCACCTGATGCTTATTCTTCAGATA 15967281 >seq7 Length=151357931 Score = 73.4 bits (80), Expect = 7e-11 Identities = 82/110 (75%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 16 CTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTA 75 ||||| |||||| | | |||||| || |||||| |||||||| ||| || |||| Sbjct 134461415 CTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTCCTGATCTCTA 134461474 Query 76 CGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 |||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 134461475 CGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 134461524 Score = 73.4 bits (80), Expect = 7e-11 Identities = 130/187 (70%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 72 TCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAAC 131 |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 134461535 TCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAGCTTGGT 134461594 Query 132 AGTTTCAAATG-CAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCG 190 |||||| | | | | | |||| |||||||| | ||| || | |||||| | Sbjct 134461595 AGTTTCCACCGTCTGTCCATGG-TTGAGCCCTGGGATTTGACGGCGGACTTGAAAAGTCA 134461653 Query 191 CCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCG 250 |||| | | |||||| ||||| | || ||||||||||||| ||| || || |||| Sbjct 134461654 CCTAAAGACGCTTTACGTCCAATCATTCTGGATAACGCTTGCATCCTCTGTCTTGCCGCA 134461713 Query 251 GCTGCTG 257 ||||||| Sbjct 134461714 GCTGCTG 134461720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828705322032