Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Asparagus_20officinalis_20[refseq_20GCF_5F001876935.1_202017-02-06] 11,792 sequences; 1,187,538,024 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2 172 4e-38 >seq2 Length=84732013 Score = 172 bits (190), Expect = 4e-38 Identities = 555/850 (65%), Gaps = 31/850 (4%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| ||||| || || || |||||||| | |||||||||||| | | |||| Sbjct 24868130 ATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGGTCGATCTCAGCCAAGAT 24868189 Query 61156 ATGAATGACTGGGAGCGTT---TATCGAGCGGTGAACAACATTTCATTAAACATGTGTTG 61212 || ||||||| | || | || || | || ||| | | || || | Sbjct 24868190 ATCCGCCACTGGGACCAAACCCTAACCGCCGACGAGCGCCACTTCGTCACCCACGTCCTC 24868249 Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || ||||| ||||| || ||||| |||||| ||||| | | |||||| | || Sbjct 24868250 GCCTTCTTCGCCGCCTCCGACGGCATCGTCCTGGAGAACCTCGCCGGCCGTTTCATGAAG 24868309 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 ||||| || || | ||||| | ||||||||||||||||| ||||| ||||| || Sbjct 24868310 GAGGTCCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATC 24868369 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGA 61391 ||||| ||||||||| ||||| |||| | ||||||| ||| | | | || | | Sbjct 24868370 CACTCCGAGATGTACTCGCTTCTCCTCGAATCCTACATCAAGGACTCCGATGAAAAGAG- 24868428 Query 61392 ACGATTGTTCAATGCCATCGAGACGATACC-GGCG--GTGAAGCGGAAAGCGGATTGGGC 61448 || | || | ||||||||||| || || ||| | || ||| || || ||||| Sbjct 24868429 CCGCCTTTTTCACGCCATCGAGACCATCCCTTGCGTCGCCAA---GAAGGCCGAGTGGGC 24868485 Query 61449 CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGT 61508 | || |||||| | || | || || | || ||||| | || ||||| Sbjct 24868486 GCTGAAGTGGATCGATGGCTCAGAGTCT---TTCGCCGAGAGATTGATCGCTTTTGCTTG 24868542 Query 61509 GGTCGAGGGTGTATTTTTC-AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTG 61567 ||||| || | || ||| ||| | |||| || || || ||| | || || || | Sbjct 24868543 CGTCGAAGGGATTTTCTTCTCCGGGAGCTTTTG-TGCCATTTTCTGGCTTAAAAAGCGCG 24868601 Query 61568 GACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATT 61627 || | ||||| || | ||||| || ||| | ||||| || ||||| ||| | |||| Sbjct 24868602 GATTGATGCCGGGGTTAACCTTTTCAAACGAGCTCATATCTCGAGACGAAGGCCTCCATT 24868661 Query 61628 GTGATTTTGCT--GTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG----G 61681 | ||||| ||| || | ||||| |||| |||| | | | ||| | Sbjct 24868662 GCGATTTCGCTTGCTTGTTGTATTC--------TCTGCTGAA-CAACAAGCTGAGCGAAG 24868712 Query 61682 AGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACG 61741 || ||||| | |||||| || || || |||||||| ||| ||| | || | Sbjct 24868713 AGAGTGTGAAGGGGATTGTGAAGGATGCTGTTGATATCGAACGGGAGTTTGTTTGCGATG 24868772 Query 61742 CTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801 || |||| || | | |||| |||||| | | || ||| | ||||||||||| | Sbjct 24868773 CTCTGCCGGTTGCTTTGGTCGGGATGAATGGGGATCTGATGAGTGAATATATTGAATTCG 24868832 Query 61802 TTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCAT 61861 | || ||||| |||||| | |||||| || | | | ||| | ||||| | Sbjct 24868833 TGGCTGACCGCTTGTTGGGGGCTTTGGGGATTGAAAAGTTGTATGGAGCTTCGAACCCGT 24868892 Query 61862 TTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAG 61921 |||||| ||||| |||||||| || | || |||||||| || |||||||| | |||| Sbjct 24868893 TTGATTGGATGGAGTTGATTTCGTTGCAGGGGAAGACGAACTTCTTCGAGAAGAGGGTAG 24868952 Query 61922 GCGACTATCA 61931 | || || || Sbjct 24868953 GGGATTACCA 24868962 Score = 172 bits (190), Expect = 4e-38 Identities = 555/850 (65%), Gaps = 31/850 (4%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| ||||| || || || |||||||| | |||||||||||| | | |||| Sbjct 26603496 ATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGGTCGATCTCAGCCAAGAT 26603437 Query 61156 ATGAATGACTGGGAGCGTT---TATCGAGCGGTGAACAACATTTCATTAAACATGTGTTG 61212 || ||||||| | || | || || | || ||| | | || || | Sbjct 26603436 ATCCGCCACTGGGACCAAACCCTAACCGCCGACGAGCGCCACTTCGTCACCCACGTCCTC 26603377 Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || ||||| ||||| || ||||| |||||| ||||| | | |||||| | || Sbjct 26603376 GCCTTCTTCGCCGCCTCCGACGGCATCGTCCTGGAGAACCTCGCCGGCCGTTTCATGAAG 26603317 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 ||||| || || | ||||| | ||||||||||||||||| ||||| ||||| || Sbjct 26603316 GAGGTCCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATC 26603257 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGA 61391 ||||| ||||||||| ||||| |||| | ||||||| ||| | | | || | | Sbjct 26603256 CACTCCGAGATGTACTCGCTTCTCCTCGAATCCTACATCAAGGACTCCGATGAAAAGAG- 26603198 Query 61392 ACGATTGTTCAATGCCATCGAGACGATACC-GGCG--GTGAAGCGGAAAGCGGATTGGGC 61448 || | || | ||||||||||| || || ||| | || ||| || || ||||| Sbjct 26603197 CCGCCTTTTTCACGCCATCGAGACCATCCCTTGCGTCGCCAA---GAAGGCCGAGTGGGC 26603141 Query 61449 CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGT 61508 | || |||||| | || | || || | || ||||| | || ||||| Sbjct 26603140 GCTGAAGTGGATCGATGGCTCAGAGTCT---TTCGCCGAGAGATTGATCGCTTTTGCTTG 26603084 Query 61509 GGTCGAGGGTGTATTTTTC-AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTG 61567 ||||| || | || ||| ||| | |||| || || || ||| | || || || | Sbjct 26603083 CGTCGAAGGGATTTTCTTCTCCGGGAGCTTTTG-TGCCATTTTCTGGCTTAAAAAGCGCG 26603025 Query 61568 GACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATT 61627 || | ||||| || | ||||| || ||| | ||||| || ||||| ||| | |||| Sbjct 26603024 GATTGATGCCGGGGTTAACCTTTTCAAACGAGCTCATATCTCGAGACGAAGGCCTCCATT 26602965 Query 61628 GTGATTTTGCT--GTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAG----G 61681 | ||||| ||| || | ||||| |||| |||| | | | ||| | Sbjct 26602964 GCGATTTCGCTTGCTTGTTGTATTC--------TCTGCTGAA-CAACAAGCTGAGCGAAG 26602914 Query 61682 AGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACG 61741 || ||||| | |||||| || || || |||||||| ||| ||| | || | Sbjct 26602913 AGAGTGTGAAGGGGATTGTGAAGGATGCTGTTGATATCGAACGGGAGTTTGTTTGCGATG 26602854 Query 61742 CTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801 || |||| || | | |||| |||||| | | || ||| | ||||||||||| | Sbjct 26602853 CTCTGCCGGTTGCTTTGGTCGGGATGAATGGGGATCTGATGAGTGAATATATTGAATTCG 26602794 Query 61802 TTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCAT 61861 | || ||||| |||||| | |||||| || | | | ||| | ||||| | Sbjct 26602793 TGGCTGACCGCTTGTTGGGGGCTTTGGGGATTGAAAAGTTGTATGGAGCTTCGAACCCGT 26602734 Query 61862 TTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAG 61921 |||||| ||||| |||||||| || | || |||||||| || |||||||| | |||| Sbjct 26602733 TTGATTGGATGGAGTTGATTTCGTTGCAGGGGAAGACGAACTTCTTCGAGAAGAGGGTAG 26602674 Query 61922 GCGACTATCA 61931 | || || || Sbjct 26602673 GGGATTACCA 26602664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397510863514880