Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq28 80.6 5e-13 seq1 75.2 2e-11 >seq28 Length=135199 Score = 80.6 bits (88), Expect = 5e-13 Identities = 210/312 (67%), Gaps = 14/312 (4%) Strand=Plus/Plus Query 17 GTGAAATAGACCCTGAACCCGCGC---GCCTACAAGCGGTCGGAGCCGA--GTGATTCGG 71 |||||||||| | |||| ||| || || ||||| || |||| || ||||| | Sbjct 95303 GTGAAATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAAAGTGAT-CTC 95361 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||||| Sbjct 95362 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 95420 Query 132 --CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | | | | ||||| || ||||||||| ||| | ||||||| || || Sbjct 95421 AACGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTCATAGGGCGATT-GTCACTGCTT 95479 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG--TCGCGGTAACGCGTGA 247 | ||| |||| | |||||||| ||| || |||| ||||| | | | ||| | Sbjct 95480 ATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCA 95539 Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307 |||| |||||||| | |||||| | | ||||||| | | || ||||||||||| Sbjct 95540 --GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAA 95597 Query 308 GGCCAATCAAAC 319 |||| || ||| Sbjct 95598 TGCCACTCGAAC 95609 Score = 80.6 bits (88), Expect = 5e-13 Identities = 210/312 (67%), Gaps = 14/312 (4%) Strand=Plus/Minus Query 17 GTGAAATAGACCCTGAACCCGCGC---GCCTACAAGCGGTCGGAGCCGA--GTGATTCGG 71 |||||||||| | |||| ||| || || ||||| || |||| || ||||| | Sbjct 119344 GTGAAATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAAAGTGAT-CTC 119286 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||||| Sbjct 119285 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 119227 Query 132 --CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | | | | ||||| || ||||||||| ||| | ||||||| || || Sbjct 119226 AACGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTCATAGGGCGATT-GTCACTGCTT 119168 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG--TCGCGGTAACGCGTGA 247 | ||| |||| | |||||||| ||| || |||| ||||| | | | ||| | Sbjct 119167 ATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCA 119108 Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307 |||| |||||||| | |||||| | | ||||||| | | || ||||||||||| Sbjct 119107 --GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAA 119050 Query 308 GGCCAATCAAAC 319 |||| || ||| Sbjct 119049 TGCCACTCGAAC 119038 >seq1 Length=75119905 Score = 75.2 bits (82), Expect = 2e-11 Identities = 209/312 (67%), Gaps = 14/312 (4%) Strand=Plus/Plus Query 17 GTGAAATAGACCCTGAACCCGCGC---GCCTACAAGCGGTCGGAGCCGA--GTGATTCGG 71 |||||||||| | |||| ||| || || ||||| || |||| || ||||| | Sbjct 35979903 GTGAAATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAAAGTGAT-CTC 35979961 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||||| Sbjct 35979962 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 35980020 Query 132 --CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | | | | ||||| || ||||||||| || | ||||||| || || Sbjct 35980021 AACGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTACATAGGGCGATT-GTCACTGCTT 35980079 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG--TCGCGGTAACGCGTGA 247 | ||| |||| | |||||||| ||| || |||| ||||| | | | ||| | Sbjct 35980080 ATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCA 35980139 Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307 |||| |||||||| | |||||| | | ||||||| | | || ||||||||||| Sbjct 35980140 --GAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAA 35980197 Query 308 GGCCAATCAAAC 319 |||| || ||| Sbjct 35980198 TGCCACTCGAAC 35980209 Score = 75.2 bits (82), Expect = 2e-11 Identities = 171/252 (68%), Gaps = 8/252 (3%) Strand=Plus/Plus Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| |||| | | | | || || ||||||||| Sbjct 65114866 TGACCGCGTGCCTGTTGAAGAATGAGCCGACGACTCA-TAGGCAGTGGCTTGGTTAAGGG 65114924 Query 132 --CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | | | | ||||| || ||||||||| ||| ||||||||| || || Sbjct 65114925 AACGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTCACAGGGCGATT-GTCACTGCTT 65114983 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAG--TCGCGGTAACGCGTGA 247 | ||| |||| | |||||||| ||| || |||| ||||| ||| | ||| | Sbjct 65114984 ATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTCGATGAAACTAAGCA 65115043 Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307 |||| ||||||| | |||||| | | ||||||| | | || ||||||||||| Sbjct 65115044 --GAGGTCCGAACCAACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAA 65115101 Query 308 GGCCAATCAAAC 319 |||| || ||| Sbjct 65115102 TGCCACTCGAAC 65115113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972799727616