Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq28 140 5e-31 seq3 140 5e-31 seq1 140 5e-31 seq4 109 8e-22 seq5 100 4e-19 >seq28 Length=135199 Score = 140 bits (154), Expect = 5e-31 Identities = 177/243 (73%), Gaps = 19/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 96734 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 96676 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 96675 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTT------------ 96628 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | |||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 96627 TTGTG----AG--GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 96574 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 96573 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 96514 Query 246 GTA 248 ||| Sbjct 96513 GTA 96511 Score = 140 bits (154), Expect = 5e-31 Identities = 177/243 (73%), Gaps = 19/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 117913 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 117971 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 117972 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTT------------ 118019 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | |||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 118020 TTGTG----AG--GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 118073 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 118074 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 118133 Query 246 GTA 248 ||| Sbjct 118134 GTA 118136 >seq3 Length=59935730 Score = 140 bits (154), Expect = 5e-31 Identities = 179/244 (73%), Gaps = 22/244 (9%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 26505357 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 26505299 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 26505298 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTT------------ 26505251 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | |||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 26505250 TTGTG----AG--GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 26505197 Query 186 TAACCACAGTTCACCCGAACGCCTTA-GTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 || | |||| | || |||| || ||||||||||||| |||||||||||||||| Sbjct 26505196 TAGAGAGAGTTGTCTCG--CGCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCG 26505139 Query 245 GGTA 248 |||| Sbjct 26505138 GGTA 26505135 >seq1 Length=75119905 Score = 140 bits (154), Expect = 5e-31 Identities = 177/243 (73%), Gaps = 19/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 35981334 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 35981276 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 35981275 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTT------------ 35981228 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | |||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 35981227 TTGTG----AG--GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 35981174 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 35981173 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 35981114 Query 246 GTA 248 ||| Sbjct 35981113 GTA 35981111 Score = 138 bits (152), Expect = 2e-30 Identities = 179/245 (73%), Gaps = 23/245 (9%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 65116237 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 65116179 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCT--CTATTCTCTGCGACCACCACCAGCTCAACA 123 ||||||||| ||||||||||| ||| || || |||||||| || Sbjct 65116178 TGTGTTTTTGGTAAACAGTCG--TCCGGGCCTGGTCACTGCGACCCCCTT---------- 65116131 Query 124 CGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTC 183 | || || | |||||||||||||||||||||||||||| |||||||||| ||| Sbjct 65116130 --TTGTG----AG--GGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTC 65116079 Query 184 CTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTA 243 |||| | |||| | || | ||| ||||||||||||| |||||||||||||||| Sbjct 65116078 CTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTC 65116019 Query 244 CGGTA 248 |||| Sbjct 65116018 GGGTA 65116014 Score = 73.4 bits (80), Expect = 5e-11 Identities = 75/96 (78%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 153 CCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAG 212 |||||||||||||||| |||||||| | |||||| | |||| | || ||| | Sbjct 60072992 CCCGAAGTTACGGGGCTATTTTGCC-AGTTCCTTGAG---AGTTGTCTCGTGTCCCTAGG 60072937 Query 213 TATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 |||||||||||| |||||||||||||||| |||| Sbjct 60072936 TATTCTCTACCTACCCACCTGTGTCGGTTTTGGGTA 60072901 >seq4 Length=48772488 Score = 109 bits (120), Expect = 8e-22 Identities = 86/102 (84%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||||||||||||||||||||||| ||||||||||| |||||| || |||| | | Sbjct 39861312 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTC 39861253 Query 202 GA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 || |||| |||||| |||||| || ||||||||||||||| Sbjct 39861252 GACGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTT 39861211 Score = 105 bits (116), Expect = 9e-21 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||| ||||||||||||||| ||||| |||||||||| ||||||| | |||| | Sbjct 7812723 GGCACCACTTCTCCCGAAGTTAGGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 7812664 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 7812663 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 7812616 >seq5 Length=28563423 Score = 100 bits (110), Expect = 4e-19 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||| ||||||||||||| |||||||| | ||||||| | |||| | Sbjct 9115861 GGCACCCCTTCTCCTGAAGTTACGGGGCTATTTTGCCAAGTTCCTTAGAGAGAGTTGTCT 9115802 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||||| ||||||| |||| Sbjct 9115801 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTATCGGTTTCGGGTA 9115754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694399811644