Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq28 91.5 2e-16 seq3 91.5 2e-16 seq1 91.5 2e-16 seq4 87.8 2e-15 >seq28 Length=135199 Score = 91.5 bits (100), Expect = 2e-16 Identities = 87/110 (79%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | || ||| || Sbjct 96572 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGG 96631 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 96632 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 96680 Score = 91.5 bits (100), Expect = 2e-16 Identities = 87/110 (79%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | || ||| || Sbjct 118075 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGG 118016 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 118015 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 117967 >seq3 Length=59935730 Score = 91.5 bits (100), Expect = 2e-16 Identities = 87/110 (79%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | || ||| || Sbjct 26505195 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGG 26505254 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 26505255 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 26505303 >seq1 Length=75119905 Score = 91.5 bits (100), Expect = 2e-16 Identities = 87/110 (79%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | || ||| || Sbjct 35981172 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGG 35981231 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 35981232 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 35981280 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | || ||| || Sbjct 65116075 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGG 65116134 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || | | |||||||| |||||||||||| || Sbjct 65116135 G-GGTCGCAGTGACCAGGCCCGGACGACTGTTTACCAAAAACACAGGTCT 65116183 >seq4 Length=48772488 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| ||||||||| || || |||| || | || ||| || Sbjct 7039557 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGAGAGAAGGGGTGCCCCCTCACAAAAGG 7039616 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 7039617 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 7039665 Score = 78.8 bits (86), Expect = 1e-12 Identities = 81/105 (77%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| ||||||||||| || ||| || | || ||| || Sbjct 7812677 TAAGGAACTCGGCAAAATAGCCCCCTAACTTCGGGAGAAGTGGTGCCCCCTCACAAAAGG 7812736 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACA 184 | || ||||| || ||| || ||| |||||||| |||||||||| Sbjct 7812737 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACA 7812780 Score = 75.2 bits (82), Expect = 1e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTT-GAGTGAATCACGGTTAA 82 ||||| |||||| || | || || ||||||| ||||| | ||| ||| || | || Sbjct 39861210 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCGTCGAGAGAACCATGTCGAA 39861269 Query 83 GGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 |||||| |||||| |||||| |||||||||||| || |||| Sbjct 39861270 GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 39861310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531199855912