Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq28 217 3e-54 seq1 217 3e-54 seq3 214 4e-53 seq4 199 8e-49 seq2 87.8 4e-15 >seq28 Length=135199 Score = 217 bits (240), Expect = 3e-54 Identities = 151/170 (89%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 91398 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 91340 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 91339 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 91280 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 91279 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 91230 Score = 212 bits (234), Expect = 1e-52 Identities = 151/171 (88%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 123249 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 123307 Query 89 CCGTAGGAGT-CTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGT 147 |||||||||| |||| |||||||||||| |||||||| |||||||||||||| |||||| Sbjct 123308 CCGTAGGAGTTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGC 123367 Query 148 TACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 ||| |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 123368 TACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 123418 >seq1 Length=75119905 Score = 217 bits (240), Expect = 3e-54 Identities = 151/170 (89%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 35975998 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 35975940 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 35975939 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 35975880 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 35975879 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 35975830 Score = 201 bits (222), Expect = 2e-49 Identities = 180/221 (81%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 46315190 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 46315133 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCC-GTAGGAGTCTGGACCGTGTCTCAGTTC 117 ||||||||||| |||||||||||||||| ||| || |||||| || |||||||||||| | Sbjct 46315132 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCC 46315073 Query 118 CAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACC 177 ||||||| |||||||||| ||||||| || | ||| | | |||||| |||| ||||| Sbjct 46315072 CAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACC 46315013 Query 178 TCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 | |||||||| ||||| | || ||||||||| | ||||| Sbjct 46315012 TGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 46314972 Score = 152 bits (168), Expect = 1e-34 Identities = 107/121 (88%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||| | || ||||||||||||| |||| Sbjct 5487560 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATCGCGGAAAATTCCCCACTGCTACCTC 5487502 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| | Sbjct 5487501 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCT 5487442 Query 149 A 149 | Sbjct 5487441 A 5487441 >seq3 Length=59935730 Score = 214 bits (236), Expect = 4e-53 Identities = 150/170 (88%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 26500046 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 26499988 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| ||||| | Sbjct 26499987 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCATCT 26499928 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 26499927 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 26499878 Score = 178 bits (196), Expect = 3e-42 Identities = 126/142 (89%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 32570576 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 32570634 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 32570635 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 32570694 Query 149 ACGGATCGTCGCCTTGGTGAGC 170 || |||| |||||||||| ||| Sbjct 32570695 AC-GATCATCGCCTTGGTAAGC 32570715 Score = 105 bits (116), Expect = 1e-20 Identities = 102/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 34 GGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTA 93 ||||||| | | |||||||||||| ||||| || ||||| || |||||||||||||| Sbjct 3036049 GGCATTGCCCCG-TCAGGCTTTCGCACATTGAGAAAAATTCCACATTGCTGCCTCCCGTA 3036107 Query 94 GGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGA 153 ||||||| | |||||| || | || ||| | ||||||||||||| |||| |||| | Sbjct 3036108 GGAGTCTAGGTTGTGTCTGGGTCCTAGCGTGCCCGATCATCCTCTCATACCAATTACTGG 3036167 Query 154 TCGTCGCCTT 163 || || |||| Sbjct 3036168 TCATCACCTT 3036177 >seq4 Length=48772488 Score = 199 bits (220), Expect = 8e-49 Identities = 147/170 (86%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 || || |||||| || ||||||||||||||||||| || ||||||| |||||||||| Sbjct 19631596 CATGCAGCATTG-CTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCGCTGCTGCCTC 19631654 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 || ||||||||||| |||||||||||| |||||||| ||||||||||| || |||||| | Sbjct 19631655 CCATAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTTTCGGACCAGCT 19631714 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 19631715 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 19631764 Score = 123 bits (136), Expect = 5e-26 Identities = 109/135 (81%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| | | | |||||||| ||||||| | || |||| ||||||||||||| Sbjct 28419645 CACGCGGCATTGCTTCG-TGAGGCTTTCACCCATTGCCAAAAATTCTCCACTGCTGCCTC 28419587 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||| | || || ||||||||| || || ||| || |||||||||| ||||||| | Sbjct 28419586 CCGTAGAAATCCGGGCCGTGTCTCGGTCTTAGCGTGGCTAATCATCCTCTGAGACCAGCT 28419527 Query 149 ACGGATCGTCGCCTT 163 || |||| | ||||| Sbjct 28419526 ACTGATCATAGCCTT 28419512 >seq2 Length=59384932 Score = 87.8 bits (96), Expect = 4e-15 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 126 CTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAAC 185 |||||||||||||| |||||| ||| |||| |||| ||||| ||| ||| |||||||||| Sbjct 55672521 CTGATCATCCTCTCGGACCAGCTACTGATCATCGCGTTGGTAAGCTATTGCCTCACCAAC 55672462 Query 186 TAGCTAATCCG 196 |||||||| || Sbjct 55672461 TAGCTAATACG 55672451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071999699840