Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq28 219 8e-55 seq1 219 8e-55 seq3 215 1e-53 seq4 199 8e-49 >seq28 Length=135199 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 91393 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 91334 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 91333 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 91274 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || || Sbjct 91273 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTGG 91214 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 91213 GCGGATTTCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAAC 91170 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||| || Sbjct 91169 CGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTTCG 91111 Query 300 CCACT 304 ||||| Sbjct 91110 CCACT 91106 Score = 214 bits (236), Expect = 4e-53 Identities = 233/306 (76%), Gaps = 19/306 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 123254 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 123313 Query 61 GAGT-CTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGA 119 |||| ||||||||||||||||||||| |||||| | ||| |||||| | || ||||| || Sbjct 123314 GAGTTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGA 123373 Query 120 TCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTC 179 || ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || || Sbjct 123374 TCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTG 123433 Query 180 AGC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGT 238 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 123434 GGCGGATTTCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAA 123477 Query 239 TCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298 |||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||| | Sbjct 123478 CCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTTC 123536 Query 299 GCCACT 304 |||||| Sbjct 123537 GCCACT 123542 >seq1 Length=75119905 Score = 219 bits (242), Expect = 8e-55 Identities = 233/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 35975993 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 35975934 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 35975933 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 35975874 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || || Sbjct 35975873 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTGG 35975814 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 35975813 GCGGATTTCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAAC 35975770 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||| || Sbjct 35975769 CGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTTCG 35975711 Query 300 CCACT 304 ||||| Sbjct 35975710 CCACT 35975706 Score = 131 bits (144), Expect = 3e-28 Identities = 122/154 (79%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCC-GTAGGAGTC 65 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||| || |||||| Sbjct 46315150 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCCGTGGGAGTC 46315091 Query 66 TGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCG 125 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | | Sbjct 46315090 CGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTG 46315031 Query 126 GCTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 ||||||| || ||| || |||||||||||||| Sbjct 46315030 GCTTGGTCAGCCTTTACCTGACCAACTACCTAAT 46314997 Score = 127 bits (140), Expect = 4e-27 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||| | | || || |||||||||| |||||||||| Sbjct 5487555 GGCATTGCTCCGTCAGGCTTTCGCCCATCGCGGAAAATTCCCCACTGCTACCTCCCGTAG 5487496 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTA 115 ||||||||||||||||||||||||| |||||| | ||| |||||||| || |||| Sbjct 5487495 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTA 5487441 >seq3 Length=59935730 Score = 215 bits (238), Expect = 1e-53 Identities = 232/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 26500041 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 26499982 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || |||| ||| Sbjct 26499981 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCATCTACTGAT 26499922 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || || Sbjct 26499921 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTGG 26499862 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||||||||| Sbjct 26499861 GCGGATTTCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAAC 26499818 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||| || Sbjct 26499817 CGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTTCG 26499759 Query 300 CCACT 304 ||||| Sbjct 26499758 CCACT 26499754 Score = 145 bits (160), Expect = 2e-32 Identities = 117/140 (84%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 32570581 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 32570640 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || |||| |||| Sbjct 32570641 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTA-CGAT 32570699 Query 121 CGTCGGCTTGGTGGGCTATT 140 | ||| |||||| ||| || Sbjct 32570700 CATCGCCTTGGTAAGCTGTT 32570719 Score = 80.6 bits (88), Expect = 5e-13 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| | ||||| | || || || || ||||||||||||||||||||| || | Sbjct 3036061 TCAGGCTTTCGCACATTGAGAAAAATTCCACATTGCTGCCTCCCGTAGGAGTCTAGGTTG 3036120 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCA 106 ||||| |||| | ||| ||| ||| ||||||| Sbjct 3036121 TGTCTGGGTCCTAGCGTGCCCGATCATCCTCTCA 3036154 >seq4 Length=48772488 Score = 199 bits (220), Expect = 8e-49 Identities = 225/299 (75%), Gaps = 18/299 (6%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| ||||||| |||| ||||||| | || || |||| |||||||||||| ||||||||| Sbjct 19631607 GCTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCGCTGCTGCCTCCCATAGGAGTCT 19631666 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| ||| || | || ||||| |||| ||| Sbjct 19631667 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTTTCGGACCAGCTACTGATCATCGC 19631726 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GAT 185 |||||| |||||| ||||||||||| |||||| | ||||||||| || || || ||| Sbjct 19631727 CTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTTGGGCGGAT 19631786 Query 186 AAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTC 245 || || ||| ||||| | | || | ||||||||| |||||| Sbjct 19631787 TTCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAACCGTTTC 19631830 Query 246 CAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 || ||| |||| || || || ||||| || ||||||||||||||| | ||||||| Sbjct 19631831 CAGTTGTTGTTCCCTTCCCAAGGGAAGGTT-CTTACGTGTTACTCACCCATTCGCCACT 19631888 Score = 89.7 bits (98), Expect = 1e-15 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | | ||| |||| ||||||| || || | ||||||||||||||||||| Sbjct 28419640 GGCATTGCTTCGTGAGGCTTTCACCCATTGCCAAAAATTCTCCACTGCTGCCTCCCGTAG 28419581 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 | || |||||||||||| ||| | ||||| ||| ||||| || || ||||| ||| Sbjct 28419580 AAATCCGGGCCGTGTCTCGGTCTTAGCGTGGCTAATCATCCTCTGAGACCAGCTACTGAT 28419521 Query 121 CGTCGGCTT 129 | | | ||| Sbjct 28419520 CATAGCCTT 28419512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998399720448