Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq28 100 2e-19 seq1 100 2e-19 seq4 98.7 8e-19 seq5 95.1 1e-17 seq3 95.1 1e-17 >seq28 Length=135199 Score = 100 bits (110), Expect = 2e-19 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||| Sbjct 92291 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 92232 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 92231 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 92172 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| | ||||||||||| || Sbjct 92171 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 92137 Score = 100 bits (110), Expect = 2e-19 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||| Sbjct 122356 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 122415 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 122416 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 122475 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| | ||||||||||| || Sbjct 122476 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 122510 >seq1 Length=75119905 Score = 100 bits (110), Expect = 2e-19 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||| Sbjct 35894839 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 35894780 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 35894779 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 35894720 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| | ||||||||||| || Sbjct 35894719 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 35894685 Score = 100 bits (110), Expect = 2e-19 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| |||||||| Sbjct 35976891 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGA 35976832 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 35976831 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 35976772 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| | ||||||||||| || Sbjct 35976771 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 35976737 Score = 100 bits (110), Expect = 2e-19 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || |||| || |||| | ||| ||| ||||||| |||||||| Sbjct 67645795 CGAGTTGCAGCCTGCAATTCGAACTAAGGATGGGTTTTTGGAGTTAGCTCACCCTCGCGA 67645736 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 67645735 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 67645676 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| | ||||||||||| || Sbjct 67645675 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 67645641 >seq4 Length=48772488 Score = 98.7 bits (108), Expect = 8e-19 Identities = 123/166 (74%), Gaps = 7/166 (4%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||| | ||| | | |||||||| ||| ||||| ||| | | Sbjct 15661383 CGAGTTGCAGAGAACAATCTGAACTGAGGCAATCTTTCTGG-ATTCGCTCCGCCTTACAG 15661325 Query 62 GTTGGCGGCCCTCTGTA--TGTAC----CATTGTATGACGTGTGAAGCCCTACCCATAAG 115 | || ||| ||| ||| ||||||| ||||||| |||| |||||||| Sbjct 15661324 CCTTGCTTCCCATTGTCATTGTCATTGTCATTGTAGCACGTGTGTGGCCCAGCCCATAAG 15661265 Query 116 GGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||| ||||||||||||||||||||||||||| || | |||| Sbjct 15661264 GGCCATGCGGACTTGACGTCATCCCCACCTTCCTCTAGTATCTCAC 15661219 >seq5 Length=28563423 Score = 95.1 bits (104), Expect = 1e-17 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 42 GGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAA 101 ||||| ||||| ||| | | | || ||| ||| | |||||||| ||||||| Sbjct 20632988 GGATTCGCTCCGCCTTACAGCCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTG 20632929 Query 102 GCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||||||| |||||||||||||||||||||||||||| || | |||| Sbjct 20632928 GCCTAGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 20632869 >seq3 Length=59935730 Score = 95.1 bits (104), Expect = 1e-17 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||| Sbjct 20778720 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCAA 20778779 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 20778780 GATCGCGACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 20778839 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || |||||| | |||||| | ||||||||||| || Sbjct 20778840 GATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 20778874 Score = 89.7 bits (98), Expect = 4e-16 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGA-TTAGCTCCCCCTCGCG 60 |||||||||| || ||||||| ||| | ||| || | ||| ||||||| |||||| | Sbjct 26500938 CGAGTTGCAGCCTGCAATCCGAACTGAGG-ACAGGTTTTTGGAGTTAGCTCACCCTCGTG 26500880 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || |||| ||| |||||||| ||||||| |||| |||||||| || Sbjct 26500879 AGATCGCAACCCTTTGTCCCGCCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCA 26500820 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 ||| || ||| | |||||| | ||||||||||| || Sbjct 26500819 TGATGAATTGGCCTCATCCTCTCCTTCCTCCGGCTT 26500784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415999887160