Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq28 158 2e-36 seq1 158 2e-36 seq4 149 1e-33 seq3 136 7e-30 seq5 86.0 1e-14 >seq28 Length=135199 Score = 158 bits (174), Expect = 2e-36 Identities = 206/285 (72%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 91739 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 91680 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || || | ||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 91679 CCGATCTCAATGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 91620 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | |||||| Sbjct 91619 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAA 91560 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||| Sbjct 91559 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 91500 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||||||| || Sbjct 91499 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 91455 Score = 158 bits (174), Expect = 2e-36 Identities = 206/285 (72%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 122908 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 122967 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || || | ||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 122968 CCGATCTCAATGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 123027 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | |||||| Sbjct 123028 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAA 123087 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||| Sbjct 123088 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 123147 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||||||| || Sbjct 123148 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 123192 >seq1 Length=75119905 Score = 158 bits (174), Expect = 2e-36 Identities = 206/285 (72%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 35976339 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 35976280 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || || | ||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 35976279 CCGATCTCAATGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 35976220 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | |||||| Sbjct 35976219 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAA 35976160 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||| Sbjct 35976159 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 35976100 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||||||| || Sbjct 35976099 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 35976055 Score = 134 bits (148), Expect = 2e-29 Identities = 178/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 44 GCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 || |||||| |||||||| | | || || | ||||||||||||| ||| | |||||| Sbjct 5487863 GCTTTCGCCGTTGGTGTTCTTTCCGATCTCAATGCATTTCACCGCTCCACCAGAAATTCC 5487804 Query 104 GATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCAT 163 |||| || | | |||| || |||||| | ||| | ||||||||||| Sbjct 5487803 CTCTGCCCCTACCGTACTCCAGCTTGGTAGTTTCCACTGCCTGTCCAGGGTTGAGCCCTG 5487744 Query 164 AGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGAT 223 | ||| || | |||||| || ||||| | |||||| |||||| | ||||||| Sbjct 5487743 GGATTTGACGGCGGACTTGAAAAGCCAGCTACAGACGCTTTACGCCCAATCATTCCGGAT 5487684 Query 224 AACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 ||||||||| ||| || |||||||| ||||||||| ||||||||| ||||||||| Sbjct 5487683 AACGCTTGCATCCTCTGTCTTACCGCGATTGCTGGCACAGAGTTAGCCGATGCTTATTCC 5487624 Query 284 TCAGGTA 290 |||| || Sbjct 5487623 TCAGATA 5487617 Score = 113 bits (124), Expect = 7e-23 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210 ||||||||||| | ||| || | |||||| || |||||| | |||||| ||| Sbjct 15372910 GGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAAAGCCACCTACAGACGCTTTACGCCC 15372969 Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270 ||| | |||||||||||||||| ||| || ||||||||||||||||||| ||||||| Sbjct 15372970 AATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACAGAGTTAGC 15373029 Query 271 CGTGGCTTATTCCTC 285 || ||||||||||| Sbjct 15373030 CGATGCTTATTCCTC 15373044 Score = 109 bits (120), Expect = 9e-22 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210 ||||||||| | | ||| || | |||||| || |||||| | |||||| ||| Sbjct 43398321 GGGTTGAGCACTGGGATTTGACGGCAGACTTGAAAAGCCACCTACAGACGCTTTACGCCC 43398380 Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270 ||| | |||||||||||||||| ||| || |||||| |||||||||||| ||||||| Sbjct 43398381 AATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGTGGCTGCTGGCACAGAGTTAGC 43398440 Query 271 CGTGGCTTATTCCTCAGGTA 290 || ||||||||||||| || Sbjct 43398441 CGATGCTTATTCCTCAGATA 43398460 Score = 80.6 bits (88), Expect = 4e-13 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 202 TTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCAC 261 ||||| |||||| | | |||||||| ||||| | | || ||||||||||||||||||| Sbjct 6217181 TTTACGCCCAATCATTTCGGATAACACTTGCATCATTTGTCTTACCGCGGCTGCTGGCAC 6217122 Query 262 GTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||| | | ||||||||||||| || Sbjct 6217121 AGAGTTATCTGATGCTTATTCCTCAGATA 6217093 >seq4 Length=48772488 Score = 149 bits (164), Expect = 1e-33 Identities = 204/285 (72%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 19631255 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 19631314 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || || | ||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 19631315 CCGATCTCAATGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 19631374 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| ||| | |||||| Sbjct 19631375 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACAGCGGACTTGAAA 19631434 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | ||| |||||||||||| ||| || ||| Sbjct 19631435 AGCCACCTACAGACGCTTTACGCCCAATCATTCCAGATAACGCTTGCATCCTCTGTCTTA 19631494 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||| ||||||| ||||||||| ||||||||||||| || Sbjct 19631495 TCGCGGCTACTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 19631539 >seq3 Length=59935730 Score = 136 bits (150), Expect = 7e-30 Identities = 204/286 (71%), Gaps = 3/286 (1%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 26500386 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 26500327 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || || | ||||| ||||||| || | |||||| |||| || | ||| || Sbjct 26500326 CCGATCTCAATGCATTCCACCGCTCCATCGGAAATTCCCTCTGCCCCTACCATACTGCAG 26500267 Query 126 AAAAACAGTTTCAAATGCAGG-CTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184 |||||| | || | | |||| |||||||| | ||| || | |||||| Sbjct 26500266 CTTGTTAGTTTCCACCGCCTGTCCATGG-TTGAGCCCTGGGATTTGACGGC-GACTTGAA 26500209 Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 || |||||| | |||||| |||||| | |||||||||||||||| ||| || || Sbjct 26500208 AAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTT 26500149 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||| ||||||||| ||||||||||||| || Sbjct 26500148 ACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 26500103 Score = 109 bits (120), Expect = 9e-22 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210 ||||||||||| | ||| || | |||||| || |||||| | ||||| ||| Sbjct 32570380 GGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAAAGCCACCTACAGACGTTTTACGCCC 32570439 Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270 ||| | |||||||||||||||| ||| | ||||||||||||||||||| ||||||| Sbjct 32570440 AATCATTCCGGATAACGCTTGCATCCTCTCTCTTACCGCGGCTGCTGGCACAGAGTTAGC 32570499 Query 271 CGTGGCTTATTCCTCAGGTA 290 || ||||||||||||| || Sbjct 32570500 CGATGCTTATTCCTCAGATA 32570519 >seq5 Length=28563423 Score = 86.0 bits (94), Expect = 1e-14 Identities = 105/141 (74%), Gaps = 7/141 (5%) Strand=Plus/Minus Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210 ||||||||||| | |||||| | |||||||| || ||| | |||||| || Sbjct 17647430 GGGTTGAGCCCTCGGATTTCACGGCGGACTTGCCACCC-----ACAGACGCTTTACGTCC 17647376 Query 211 AATAAATCCGGATAACGCTTGCCACCTAC-GTATTACCGCGGCTGCTGGCACGTAGTTAG 269 | | | | |||||||| ||||| | || | || ||||| ||||||||||||| || ||| Sbjct 17647375 AGTCATTTCGGATAACACTTGC-ATCTCCTGTCTTACCACGGCTGCTGGCACAGAGCTAG 17647317 Query 270 CCGTGGCTTATTCCTCAGGTA 290 ||| ||||||||||||| || Sbjct 17647316 CCGATGCTTATTCCTCAGATA 17647296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828799775188