Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 9e-16 >seq1 Length=75119905 Score = 89.7 bits (98), Expect = 9e-16 Identities = 101/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 97 CAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCG 156 || |||| ||||||| | ||||| || ||| || || || |||||||| || || || Sbjct 49914147 CATGGAATGCTTCTT-GAGGAATATCAACGGACCCTACACGTTTCATGCGCTTCTTCCCT 49914205 Query 157 GCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCC 216 ||||||||||||| |||| ||| || || | | |||||| || ||||| |||||| Sbjct 49914206 TCCTTTTGCTTCTCTAGCAACTTCTTTTTCCGAGTAATGTCACCACCATAGCACTTGGCC 49914265 Query 217 AGTACGTTCTTTCT 230 || || |||||||| Sbjct 49914266 AGAACATTCTTTCT 49914279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838399765248