Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq28 271 2e-70 seq1 271 2e-70 seq3 266 8e-69 seq4 230 6e-58 >seq28 Length=135199 Score = 271 bits (300), Expect = 2e-70 Identities = 307/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 91424 TTGACGACCCGTAGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 91365 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 91364 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 91305 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 91304 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 91245 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| | | | || | || || |||| Sbjct 91244 ACTAGCTAATCAGACGCGAGCCCCTCC--TTGGG-------CGGATTTCTCC--TTTTGC 91196 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||||| ||| | ||||||| |||| Sbjct 91195 TCCTCAGCC--TACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCA 91138 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||| ||||||| ||| || || |||| Sbjct 91137 GGTTCTTACGCGTTACTCACCCGTTCGCCACT------GGAAACACCA-----CTTC--- 91092 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||| || ||||||||||||||| ||||| Sbjct 91091 ---CCGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 91045 Score = 264 bits (292), Expect = 3e-68 Identities = 307/411 (75%), Gaps = 31/411 (8%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 123223 TTGACGACCCGTAGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 123282 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGT-CTGGACCGTGTCTCAGTTCCAGTG 123 | | || |||||||||||||||||||||||||||| |||| |||||||||||| |||||| Sbjct 123283 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTTCTGGGCCGTGTCTCAGTCCCAGTG 123342 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | || Sbjct 123343 TGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACC 123402 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 |||||||||||| | | | | ||| | | | || | || || |||| Sbjct 123403 AACTAGCTAATCAGACGCGAGCCCCTCC--TTGGG-------CGGATTTCTCC--TTTTG 123451 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 || | | | || | ||||||||| |||||||||||| ||| | ||||||| ||| Sbjct 123452 CTCCTCAGCC--TACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGC 123509 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 || ||| | | |||||||||||| ||||||| ||| || || |||| Sbjct 123510 AGGTTCTTACGCGTTACTCACCCGTTCGCCACT------GGAAACACCA-----CTTC-- 123556 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||| || ||||||||||||||| ||||| Sbjct 123557 ----CCGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 123603 >seq1 Length=75119905 Score = 271 bits (300), Expect = 2e-70 Identities = 307/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 35976024 TTGACGACCCGTAGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 35975965 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 35975964 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 35975905 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 35975904 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 35975845 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| | | | || | || || |||| Sbjct 35975844 ACTAGCTAATCAGACGCGAGCCCCTCC--TTGGG-------CGGATTTCTCC--TTTTGC 35975796 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||||| ||| | ||||||| |||| Sbjct 35975795 TCCTCAGCC--TACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCA 35975738 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||| ||||||| ||| || || |||| Sbjct 35975737 GGTTCTTACGCGTTACTCACCCGTTCGCCACT------GGAAACACCA-----CTTC--- 35975692 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||| || ||||||||||||||| ||||| Sbjct 35975691 ---CCGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 35975645 Score = 178 bits (196), Expect = 3e-42 Identities = 127/146 (87%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| ||||||| Sbjct 5487586 TTGACGACCCGTAGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATC 5487527 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||||||||||| |||||||||||||||||| |||||||||||| ||||||| Sbjct 5487526 GCGGAAAATTCCCCACTGCTACCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 5487467 Query 125 GGCTGGTCATCCTCTCAGACCAGCTA 150 ||||| |||||||||||||||||||| Sbjct 5487466 GGCTGATCATCCTCTCAGACCAGCTA 5487441 Score = 163 bits (180), Expect = 7e-38 Identities = 154/194 (79%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 46315190 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 46315131 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCC-GTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 ||||| ||| |||||||||||||||| ||| || |||||| || |||||||||||| ||| Sbjct 46315130 ATTGTCCAAGATTCCCCACTGCTGCCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCA 46315071 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 ||||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 46315070 GTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTG 46315011 Query 181 GCCAACTAGCTAAT 194 ||||||| ||||| Sbjct 46315010 ACCAACTACCTAAT 46314997 >seq3 Length=59935730 Score = 266 bits (294), Expect = 8e-69 Identities = 306/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 26500072 TTGACGACCCGTAGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 26500013 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 26500012 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 26499953 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||| ||| |||| |||||| ||| || ||| || | ||| Sbjct 26499952 GGCTGATCATCCTCTCGGACCATCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 26499893 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| | | | || | || || |||| Sbjct 26499892 ACTAGCTAATCAGACGCGAGCCCCTCC--TTGGG-------CGGATTTCTCC--TTTTGC 26499844 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||||| ||| | ||||||| |||| Sbjct 26499843 TCCTCAGCC--TACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCA 26499786 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||| ||||||| ||| || || |||| Sbjct 26499785 GGTTCTTACGCGTTACTCACCCGTTCGCCACT------GGAAACACCA-----CTTC--- 26499740 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||| || ||||||||||||||| ||||| Sbjct 26499739 ---CCGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 26499693 Score = 192 bits (212), Expect = 1e-46 Identities = 141/163 (87%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 32570550 TTGACGACCCGTAGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 32570609 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 32570610 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 32570669 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 ||||| |||||||||| ||||||||| |||| |||||| ||| Sbjct 32570670 GGCTGATCATCCTCTCGGACCAGCTA-CGATCATCGCCTTGGT 32570711 Score = 102 bits (112), Expect = 2e-19 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 |||| |||||||| | | ||| ||||| || | |||||||| ||| ||||| | || Sbjct 3036024 ACCCACAGGCCTTCCACCTCCACTTGGCATTGCCCCGTCAGGCTTTCGCACATTGAGAAA 3036083 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 ||||| || ||||||||||||||||||||| | |||||| || | || ||| | | Sbjct 3036084 AATTCCACATTGCTGCCTCCCGTAGGAGTCTAGGTTGTGTCTGGGTCCTAGCGTGCCCGA 3036143 Query 131 TCATCCTCTCAGACCA 146 ||||||||||| |||| Sbjct 3036144 TCATCCTCTCATACCA 3036159 >seq4 Length=48772488 Score = 230 bits (254), Expect = 6e-58 Identities = 298/410 (73%), Gaps = 30/410 (7%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | || || |||| ||| |||||||||| |||||||| Sbjct 19631570 TTGACGACCCGTAGGCCTTCCACCTCCATGCAGCATTGCTCCATCAGGCTTTCGCCCATT 19631629 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||||| |||||||||||| ||||||||||| |||||||||||| ||||||| Sbjct 19631630 GCGGAAAATTCCCCGCTGCTGCCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 19631689 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| ||||||| || ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 19631690 GGCTGATCATCCTTTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 19631749 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| | | | || | || || |||| Sbjct 19631750 ACTAGCTAATCAGACGCGAGCCCCTCC--TTGGG-------CGGATTTCTCC--TTTTGC 19631798 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||||| ||| | ||| ||| || | Sbjct 19631799 TCCTCAGCC--TACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCTTCCCAAGGGAA 19631856 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | |||||||||| | ||||||| ||| || || |||| Sbjct 19631857 GGTTCTTACGTGTTACTCACCCATTCGCCACT------GGAAACACCA-----CTTC--- 19631902 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||| || |||||||||| |||| ||||| Sbjct 19631903 ---CCGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCATTCATCCTGAG 19631949 Score = 129 bits (142), Expect = 1e-27 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 3 ACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||| | ||||| ||| |||| | | |||||||||| ||| | | |||||| | |||| Sbjct 28419673 ACTTGGCGACCCGTAGGTCTTCCACCTCCACGCGGCATTGCTTCGTGAGGCTTTCACCCA 28419614 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 ||| || |||| ||||||||||||||||||| | || || ||||||||| || || Sbjct 28419613 TTGCCAAAAATTCTCCACTGCTGCCTCCCGTAGAAATCCGGGCCGTGTCTCGGTCTTAGC 28419554 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCT 163 |||||| ||||||||| |||||||||| |||| | |||| Sbjct 28419553 GTGGCTAATCATCCTCTGAGACCAGCTACTGATCATAGCCT 28419513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222399657728