Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq28 333 8e-89 seq1 333 8e-89 seq3 329 1e-87 seq4 302 1e-79 seq5 127 6e-27 seq2 78.8 3e-12 >seq28 Length=135199 Score = 333 bits (368), Expect = 8e-89 Identities = 281/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 91227 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 91286 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 91287 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 91346 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 91347 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGA 91406 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGG 397 |||||| |||||||| || ||| | ||| |||| | |||||||||| |||||| Sbjct 91407 AGGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAAT 91466 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 91467 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 91526 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || | ||||| Sbjct 91527 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 91568 Score = 331 bits (366), Expect = 3e-88 Identities = 282/344 (82%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 123421 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 123362 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCA-AACTCCTACGGGAGGCA 278 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 123361 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGAACTCCTACGGGAGGCA 123302 Query 279 GCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATG 338 |||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | | Sbjct 123301 GCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGG 123242 Query 339 AAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAG 396 ||||||| |||||||| || ||| | ||| |||| | |||||||||| |||||| Sbjct 123241 AAGGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAA 123182 Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 |||| ||||||||| ||||||||||||||||||| || ||| || |||||||||| Sbjct 123181 TAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCC 123122 Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||| | | |||||||||| || |||||||| || | ||||| Sbjct 123121 GGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 123079 >seq1 Length=75119905 Score = 333 bits (368), Expect = 8e-89 Identities = 281/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 35975827 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 35975886 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 35975887 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 35975946 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 35975947 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGA 35976006 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGG 397 |||||| |||||||| || ||| | ||| |||| | |||||||||| |||||| Sbjct 35976007 AGGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAAT 35976066 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 35976067 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 35976126 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || | ||||| Sbjct 35976127 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 35976168 Score = 239 bits (264), Expect = 1e-60 Identities = 229/291 (79%), Gaps = 3/291 (1%) Strand=Plus/Plus Query 212 TAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACG 271 |||| | |||||||| ||||| |||||| ||| |||||||||||| ||| ||||||||| Sbjct 5487441 TAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACG 5487500 Query 272 GGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 ||||| ||||||||||||| || | | |||||| ||||||||| | ||||| |||||||| Sbjct 5487501 GGAGGTAGCAGTGGGGAATTTTCCGCGATGGGCGAAAGCCTGACGGAGCAATGCCGCGTG 5487560 Query 332 AGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGA--AGATAATGACGGTACT 389 | |||||||| |||||||| || ||| | ||| || | | |||||||||| Sbjct 5487561 GAGGTGGAAGGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAATAAACAATGACGGTATC 5487620 Query 390 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 449 |||||| |||| ||||||||| ||||||||| |||||||| || ||| || ||| Sbjct 5487621 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAATCGCGGTAAGACAGAGGATGCAAGC 5487680 Query 450 GTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||||||| | | |||||||||| || |||| ||| || | ||||| Sbjct 5487681 GTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGCTGGCTTTTCAAGTC 5487730 Score = 201 bits (222), Expect = 3e-49 Identities = 205/264 (78%), Gaps = 5/264 (2%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 46314997 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 46315056 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGG-CAGCAGTGGG 286 ||||| |||||| ||| |||||||||||| || ||||| ||||| || |||||||||| Sbjct 46315057 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGGCAGCAGTGGG 46315116 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC-- 344 |||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | Sbjct 46315117 GAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAA 46315176 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCC 402 | | | | |||||||||| || || | | ||| ||||| | ||| ||||| |||||| Sbjct 46315177 TGCCGCTTGTAAAGCTCTTTCGTCTAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCC 46315236 Query 403 CCGGCTAACTACGTGCCAGCAGCC 426 |||||||||| |||||||||||| Sbjct 46315237 CCGGCTAACTCTGTGCCAGCAGCC 46315260 Score = 125 bits (138), Expect = 2e-26 Identities = 157/213 (74%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 285 GGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC 344 |||||| || | |||||||| || |||||| | ||||| |||||||| | ||||||| Sbjct 6216990 GGGAATTTTCCGCAATGGGCGAATGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAGGCC 6217049 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAA--TGACGGTACTTGAGGAGGAAGCC 402 | |||||||| || ||| | || | ||||| | ||||| || |||||| |||| Sbjct 6217050 TACGGGTCGTCAACTTCTTTTCTTGAAGAAGAAACAGTGACGATATCTGAGGAATAAGCA 6217109 Query 403 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 | | ||||| ||||||||||||||||||| || | | || || |||||||| ||| Sbjct 6217110 TCAGATAACTCTGTGCCAGCAGCCGCGGTAAGACAAATGATGCAAGTGTTATCCGAAATG 6217169 Query 463 ACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTT 495 | | ||||||||| | |||||||| || || Sbjct 6217170 A-TTGGGCGTAAATCATCTGTAGGTGGCTTTTT 6217201 Score = 114 bits (126), Expect = 4e-23 Identities = 124/162 (77%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATA--ATGACGGTACTTGAGGAGGA 398 ||||| ||||||| || ||| | ||| ||||| | ||||| ||| |||||| | Sbjct 43398507 GGCCTATGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACAGTATCTGAGGAATA 43398448 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 ||| ||||||||| |||||||||||| |||||| || ||| || |||||||||||| Sbjct 43398447 AGCATCGGCTAACTCTGTGCCAGCAGCCACGGTAAGACAGAGGATGCAAGCGTTATCCGG 43398388 Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| | | |||||||||| || |||||||| || | ||||| Sbjct 43398387 AATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 43398347 Score = 111 bits (122), Expect = 5e-22 Identities = 99/123 (80%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 |||||||||| ||||| |||| ||||||||| ||||||||||||||||||| || Sbjct 15373057 AATGACGGTATCCGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACA 15372998 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 ||| || ||||||||||||||| | | |||||||||| || |||||||| || | || Sbjct 15372997 GAGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAA 15372939 Query 498 GTC 500 ||| Sbjct 15372938 GTC 15372936 >seq3 Length=59935730 Score = 329 bits (364), Expect = 1e-87 Identities = 280/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| ||||||||| | Sbjct 26499875 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGATGGT 26499934 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 26499935 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 26499994 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 26499995 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGA 26500054 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGG 397 |||||| |||||||| || ||| | ||| |||| | |||||||||| |||||| Sbjct 26500055 AGGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAAT 26500114 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 26500115 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 26500174 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || | ||||| Sbjct 26500175 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 26500216 Score = 286 bits (316), Expect = 1e-74 Identities = 255/316 (81%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 187 AACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAA 246 ||| |||||||||||||| |||| ||||| | | |||||| ||||| |||||| ||| | Sbjct 32570719 AACAGCTTACCAAGGCGATGATC-GTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGA 32570661 Query 247 CTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAA 306 ||||||||||| ||| |||||||||||||||||||||||||||| || | |||||||| | Sbjct 32570660 CTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGA 32570601 Query 307 AAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCC 366 |||||||| | ||||| |||||||| | |||||||| |||||||| || ||| | | Sbjct 32570600 AAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAGGCCTACGGGTCGTCAACTTCTTTTC 32570541 Query 367 TCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAG 424 || | |||| | |||||||||| |||||| |||| ||||||||| |||||||||| Sbjct 32570540 TCGAAGAAGAAACAATGACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAG 32570481 Query 425 CCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTA 484 ||||||||| | ||| || ||||||||||||||| | | ||||||||| || ||| Sbjct 32570480 CCGCGGTAAGAGAGAGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAACGTCTGTA 32570422 Query 485 GGTGGTTTCTTAAGTC 500 ||||| || | ||||| Sbjct 32570421 GGTGGCTTTTCAAGTC 32570406 Score = 98.7 bits (108), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 5/212 (2%) Strand=Plus/Minus Query 188 ACGGCTTACCAA--GGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGA 245 || ||||||||| || || || ||||| | ||||||| ||||||| ||| | | Sbjct 3036189 ACAGCTTACCAAAAGGTGATGACCAGTAATTGGTATGAGAGGATGATCGGGCACGCTAGG 3036130 Query 246 ACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCA 305 || |||||| | | ||||||||||||||||||| || ||||| || | ||||| || Sbjct 3036129 ACCCAGACACAACCTAGACTCCTACGGGAGGCAGCAATGTGGAATTTTTCTCAATGTGCG 3036070 Query 306 AAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTC-GTAAAGCTCTGT 364 ||||||||| | |||| ||| ||| | |||||||| ||||| || || | | | Sbjct 3036069 AAAGCCTGACGGGGCAATGCCAAGTGGAGGTGGAAGGCCTGTGGGTCAGTGAACTTTTTT 3036010 Query 365 CCTCAAGGAAGATA--ATGACGGTACTTGAGG 394 ||| ||||| | |||| | || |||||| Sbjct 3036009 TCTCGGAGAAGAAACGATGATGATATTTGAGG 3035978 Score = 87.8 bits (96), Expect = 5e-15 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 318 AGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGAT 377 ||||| |||||||| | |||||||| |||||||| || ||| | ||| ||||| Sbjct 22407733 AGCAATGCCGCGTGGAGGTGGAAGGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAA 22407674 Query 378 A--ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGG 430 | ||||||||| |||||| |||| ||||||||| |||||||||||||||| Sbjct 22407673 ACAATGACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGG 22407619 >seq4 Length=48772488 Score = 302 bits (334), Expect = 1e-79 Identities = 274/343 (80%), Gaps = 3/343 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 19631767 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 19631708 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | || ||| ||||| |||||| ||| |||||||||||| ||| ||||||| ||||||||| Sbjct 19631707 CCGAAAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTATGGGAGGCAG 19631648 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||| ||||||| || | |||||||| ||||||||||| ||||| || || || | || Sbjct 19631647 CAGCGGGGAATTTTCCGCAATGGGCGAAAGCCTGATGGAGCAATGCTGCATGGAGGTGGA 19631588 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGG 397 |||||| |||||||| || ||| | ||| |||| | |||||||||| |||||| Sbjct 19631587 AGGCCTACGGGTCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAAT 19631528 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||| ||||||| ||| || ||| || ||||||||| | Sbjct 19631527 AAGCATCGGCTAACTCTGTGCCAGTAGCCGCGATAAGACAGAGGATGCAAGCGTTATCTG 19631468 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || | ||||| Sbjct 19631467 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC 19631426 Score = 150 bits (166), Expect = 5e-34 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 198 AAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGG 257 ||||| | |||||||||| | || ||||| |||| ||||| | || ||||||||| Sbjct 28419512 AAGGCTATGATCAGTAGCTGGTCTCAGAGGATGATTAGCCACGCTAAGACCGAGACACGG 28419571 Query 258 TCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGC 317 || | | ||||||||||||||||||| |||| || ||||||| ||||||| | | Sbjct 28419572 CCCGGATTTCTACGGGAGGCAGCAGTGGAGAATTTTTGGCAATGGGTGAAAGCCTCACGA 28419631 Query 318 AGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG-- 375 ||||| |||||||| | |||| ||| ||||||| ||| ||| | ||| |||| Sbjct 28419632 AGCAATGCCGCGTGGAGGTGGAAGACCTACGGGTCGCCAAGTTCTTTTCTCGGAGAAGAA 28419691 Query 376 ATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCG 427 | ||||||| || |||||| || | ||||||||| |||||||||| ||| Sbjct 28419692 ACAATGACGATATCTGAGGAATAAACATCGGCTAACTCCGTGCCAGCATCCG 28419743 >seq5 Length=28563423 Score = 127 bits (140), Expect = 6e-27 Identities = 149/197 (76%), Gaps = 7/197 (4%) Strand=Plus/Plus Query 297 CAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAA 356 |||||||| ||||||||| | ||||| ||||||| | |||||||| |||||||| | Sbjct 17647205 CAATGGGCGAAAGCCTGACGGAGCAATACCGCGTGGAGGTGGAAGGCCTACGGGTCGTCA 17647264 Query 357 AGCTCTGTCCTCAAGGAAGATA--ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTAC 414 ||| | |||| ||||| | ||||||||| |||||| |||| |||||| || Sbjct 17647265 GCTTCTTTTCTCAGAGAAGAAACAATGACGGTATCTGAGGAATAAGCATCGGCTAGCTCT 17647324 Query 415 GTGCCAGCAGCCGCGGTAATACGTAGGGG--GCTAGCGTTATCCGGAATTACTGGGGCGT 472 ||||||||||||| ||||| || ||| | || || |||||||| ||| ||| || ||| Sbjct 17647325 GTGCCAGCAGCCGTGGTAAGAC--AGGAGATGCAAGTGTTATCCGAAATGACT-GGACGT 17647381 Query 473 AAAGGGTGCGTAGGTGG 489 |||| || || ||||| Sbjct 17647382 AAAGCGTCTGTGGGTGG 17647398 >seq2 Length=59384932 Score = 78.8 bits (86), Expect = 3e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGC 215 ||||||||| |||||||||||||||| || |||||||||||||| |||||||||| Sbjct 35955806 CGCGTCTGACTAGCTAGTTGGTAAGGCAATAGCTTACCAAGGCGATGATCAGTAGC 35955861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497599580672