Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq28 264 3e-68 seq1 264 3e-68 seq4 246 7e-63 seq3 224 2e-56 seq5 127 5e-27 >seq28 Length=135199 Score = 264 bits (292), Expect = 3e-68 Identities = 303/405 (75%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 91459 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 91518 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 91519 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 91578 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 91579 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 91638 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| ||||||||||||| | || || | | |||||||| |||||| Sbjct 91639 GAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAA 91698 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| |||||||||| ||||| Sbjct 91699 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 91758 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCG-CATAAGTG 363 ||| |||| ||||||| ||||||||||||| |||||||||| | | ||| | | Sbjct 91759 AGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTG-CTGTGCGACTCGACCC 91817 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 91818 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 91862 Score = 264 bits (292), Expect = 3e-68 Identities = 303/405 (75%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 123188 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 123129 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 123128 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 123069 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 123068 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 123009 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| ||||||||||||| | || || | | |||||||| |||||| Sbjct 123008 GAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAA 122949 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| |||||||||| ||||| Sbjct 122948 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 122889 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCG-CATAAGTG 363 ||| |||| ||||||| ||||||||||||| |||||||||| | | ||| | | Sbjct 122888 AGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTG-CTGTGCGACTCGACCC 122830 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 122829 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 122785 >seq1 Length=75119905 Score = 264 bits (292), Expect = 3e-68 Identities = 303/405 (75%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 35976059 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 35976118 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 35976119 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 35976178 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 35976179 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 35976238 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| ||||||||||||| | || || | | |||||||| |||||| Sbjct 35976239 GAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAA 35976298 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| |||||||||| ||||| Sbjct 35976299 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 35976358 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCG-CATAAGTG 363 ||| |||| ||||||| ||||||||||||| |||||||||| | | ||| | | Sbjct 35976359 AGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTG-CTGTGCGACTCGACCC 35976417 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 35976418 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 35976462 Score = 158 bits (174), Expect = 3e-36 Identities = 190/256 (74%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 154 GAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATG 213 |||||| | ||| |||| | | ||||||| |||||| | ||| |||||||||||| Sbjct 35894156 GAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATG 35894215 Query 214 CGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTG 273 | | || || | | |||||||| |||||| || |||||| | | |||||||||| Sbjct 35894216 CATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTG 35894275 Query 274 AGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACG 333 || ||||||| |||||||||| |||||||| |||| ||||||| |||||||||| Sbjct 35894276 AGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTAGCCGTAAACG 35894335 Query 334 ATGAATACTAGGTGTCGGGGCG-CATAAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTA 392 ||| |||||||||| | | ||| | | | | |||| | ||| ||||| |||||| Sbjct 35894336 ATGGATACTAGGTG-CTGTGCGACTCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTA 35894394 Query 393 TTCCACCTGGGGAGTA 408 | || ||||||||||| Sbjct 35894395 TCCCGCCTGGGGAGTA 35894410 Score = 154 bits (170), Expect = 4e-35 Identities = 180/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||| |||||||| || ||| || ||| Sbjct 5487621 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAATCGCGGTAAGACAGAGGATGCAAGC 5487680 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||| ||| || | ||||| | || ||| Sbjct 5487681 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGCTGGCTTTTCAAGTCCGCCGTCAAA 5487740 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 5487741 TCCCAGGGCTCAACCCTGGACAGGCAGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 5487800 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| || ||| ||||||||||||| | || || | | |||||||| |||||| Sbjct 5487801 GAGGGAATTTCTGGTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAA 5487860 Query 245 GGC 247 || Sbjct 5487861 AGC 5487863 Score = 141 bits (156), Expect = 2e-31 Identities = 123/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 ||||||||| | |||||| |||||||| ||||||| | | |||||| ||| ||||| Sbjct 46315286 AGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAA 46315345 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 ||| ||| |||| || ||| ||| || ||||||| |||||||| ||||||||| Sbjct 46315346 GGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATT 46315405 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||||||||||||||| |||||||||||||| Sbjct 46315406 AGATACCCTGGTAGTCCATGCCGTAAACGATGA 46315438 Score = 118 bits (130), Expect = 3e-24 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 6 GAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCG 65 ||||| |||| ||||||||| ||||||||||||||||||| || ||| || |||| Sbjct 15373044 GAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCG 15372985 Query 66 TTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAG 125 ||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 15372984 TTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAAT 15372925 Query 126 GCTATGGCTCAACCCCGG 143 | | |||||||||| || Sbjct 15372924 CCCAGGGCTCAACCCTGG 15372907 Score = 114 bits (126), Expect = 3e-23 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 165 GCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTA 224 ||| |||| | | || | || |||||| | ||| |||| |||||||| | || || | Sbjct 17812115 GCTGGAGTACGGCAGAGACAGAGGGAATTTCCGGTGGAGCGATGAAATGCATTGAGATCA 17812174 Query 225 GGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAG 284 | | |||||||| |||||| || |||||| | | |||||| ||||| |||||| Sbjct 17812175 GAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACGCTGAGAGACGAAAG 17812234 Query 285 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAG 344 | ||||| |||| |||||| | |||| |||||| ||||||||||||| ||||||| Sbjct 17812235 CTAGGGGAACAAATGGGATTAAAGACCCCAATAGTCCTAGCCGTAAACGATGGATACTAG 17812294 Query 345 GTG 347 ||| Sbjct 17812295 GTG 17812297 Score = 111 bits (122), Expect = 4e-22 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| |||||||||||| |||||| || ||| || ||| Sbjct 43398456 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCACGGTAAGACAGAGGATGCAAGC 43398397 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 43398396 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCTGCCGTCAAA 43398337 Query 125 GGCTATGGCTCAACCCCGG 143 | | ||||||||| || Sbjct 43398336 TCCCAGTGCTCAACCCTGG 43398318 Score = 73.4 bits (80), Expect = 1e-10 Identities = 79/105 (75%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| | | ||||| ||||||||||||||||||| || | | || || Sbjct 6217097 TGAGGAATAAGCATCAGATAACTCTGTGCCAGCAGCCGCGGTAAGACAAATGATGCAAGT 6217156 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTT 109 |||||||| ||| | |||||||||| | |||||||| || || Sbjct 6217157 GTTATCCGAAATGATTGGGCGTAAATCATCTGTAGGTGGCTTTTT 6217201 >seq4 Length=48772488 Score = 246 bits (272), Expect = 7e-63 Identities = 299/405 (74%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||| ||||||| ||| || ||| || ||| Sbjct 19631535 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGTAGCCGCGATAAGACAGAGGATGCAAGC 19631476 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||| ||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 19631475 GTTATCTGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCTGTCAAA 19631416 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 19631415 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 19631356 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| ||||||||||||| | || || | | |||||||| |||||| Sbjct 19631355 GAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAA 19631296 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| |||||||||| ||||| Sbjct 19631295 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 19631236 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATA-AGTG 363 ||| |||| ||||||| ||||||||||||| |||||||||| | | ||| || | Sbjct 19631235 AGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTG-CTGTGCGACTAGACCC 19631177 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | ||| | ||| ||| | ||||||| || ||||||||||| Sbjct 19631176 GTGCAGTGTTGTAGCTAACACGTTAAGTATCCCGCCTGGGGAGTA 19631132 Score = 100 bits (110), Expect = 7e-19 Identities = 162/233 (70%), Gaps = 9/233 (4%) Strand=Plus/Plus Query 131 GGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGA 190 || ||||||| || || | |||||| | || |||| | | ||||||| ||| Sbjct 17305333 GGTTCAACCCTGGACAGGCGGTGGAAACTACCAAGCCGGAGTACGGTAGGGGCAGAGGGA 17305392 Query 191 ATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAG--------GAACACCAGTGGCG 242 ||| | || |||||||||||| | ||| | ||| |||||||| |||| Sbjct 17305393 ATTTCCGATGGAGCGGTGAAATGTATTGATGTATTGAGATCGGAAAGAACACCAACGGCG 17305452 Query 243 AAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGA 302 || || ||||| | | |||||||||||| ||||| |||||||||| ||| Sbjct 17305453 AAAGCACTCTGCTGCGCCGACACTGACACTGAGAGATGAAAGATAGGGGAGCAAATGGGA 17305512 Query 303 TTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCG 355 ||||| |||| ||||||| ||| ||||||||| |||||||||| | ||||| Sbjct 17305513 TTAGAGACCCCAGTAGTCCTAGCCATAAACGATGGATACTAGGTG-CTGGGCG 17305564 Score = 75.2 bits (82), Expect = 3e-11 Identities = 88/117 (75%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 68 ATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGC 127 ||||||||| ||||||||||| || ||| ||||||| | |||| || || ||| | Sbjct 28419739 ATCCGGAATG--TGGGCGTAAAGAGTCTGTAAGTGGTTTTTCCAGTCCGATGTCAAATCC 28419796 Query 128 TATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 || ||||||| || |||| || | |||||| || |||||||| | | ||||||| Sbjct 28419797 TAGGGCTCAA-CCTTGGACAGCGGTGGAAACTACAAAGCTAGAGTACCGCAGGGGCA 28419852 Score = 73.4 bits (80), Expect = 1e-10 Identities = 79/105 (75%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 39 GCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTA 98 |||||| ||| | ||| || ||||||||||||||| | ||||| ||||| || ||| Sbjct 1888785 GCCGCGATAAGATAGAGGATGCAAGCGTTATCCGGAATGATTGGGCATAAAGCGTCTGTA 1888726 Query 99 GGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGG 143 ||||| || | ||||| | || ||| | | |||||||||| || Sbjct 1888725 GGTGGCTTTTCAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGG 1888681 >seq3 Length=59935730 Score = 224 bits (248), Expect = 2e-56 Identities = 295/405 (73%), Gaps = 3/405 (1%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 26500107 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 26500166 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 26500167 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTC-GCCGTCAAA 26500225 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | ||||||||| || || | |||||| ||| ||| | ||||||| Sbjct 26500226 TCCCAGGGCTCAACCATGGACAGGCGGTGGAAACTAACAAGCTGCAGTATGGTAGGGGCA 26500285 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | || ||||||| ||||| | || || | | |||||||| |||||| Sbjct 26500286 GAGGGAATTTCCGATGGAGCGGTGGAATGCATTGAGATCGGAAAGAACACCAACGGCGAA 26500345 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| |||||||||| || || Sbjct 26500346 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGGTT 26500405 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCG-CATAAGTG 363 ||| |||| ||||||| ||||||||||||| |||||||||| | | ||| | | Sbjct 26500406 AGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTG-CTGTGCGACTCGACCC 26500464 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||| ||| || ||||||||||| Sbjct 26500465 GTGCAGTGCTGTAGCTAACGCGTTAAATATCCCGCCTGGGGAGTA 26500509 Score = 111 bits (122), Expect = 4e-22 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| | ||| || ||| Sbjct 32570515 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGAGAGAGGATGCAAGC 32570456 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | |||||||||| || |||||||| || | ||||| | || ||| Sbjct 32570455 GTTATCCGGAATGATTGGGCGTAAAACGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 32570396 Query 125 GGCTATGGCTCAACCCCGG 143 | | |||||||||| || Sbjct 32570395 TCCCAGGGCTCAACCCTGG 32570377 Score = 86.0 bits (94), Expect = 2e-14 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 34 CAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGT 93 ||||||||||||||| || ||| || ||||||||||||||| | ||| ||||||| || Sbjct 36700837 CAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGATTGGACGTAAAGCGT 36700778 Query 94 GCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGG 143 |||||||| || | ||||| | || ||| | | ||||||||| || Sbjct 36700777 CTGTAGGTGGCTTTTCAAGTCTGCCGTCAAATCCCAGTGCTCAACCCTGG 36700728 >seq5 Length=28563423 Score = 127 bits (140), Expect = 5e-27 Identities = 186/263 (71%), Gaps = 9/263 (3%) Strand=Plus/Plus Query 86 TAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGA 145 ||||| || ||||||||| || | ||||| | || ||| ||| ||||| || || Sbjct 16188780 TAAAGTGTCCGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCCTAGAGCTCAGGCCTGGAC 16188839 Query 146 CTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCG 205 || | |||||| | ||| |||| | | ||||||| |||||| | ||| |||| Sbjct 16188840 AAGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCG 16188899 Query 206 GTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAAC 265 ||||||||| | || || | | |||||||| |||||| || |||||| Sbjct 16188900 GTGAAATGCATTGAGATCGGAAAGAACACCAC-GGCGAAAGCACTCTGCTGG-------- 16188950 Query 266 TGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGC 325 |||||||||| ||||||| |||||||||| |||||||| | || |||||| | Sbjct 16188951 TGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGATCCCATTAGTCCTAGT 16189010 Query 326 CGTAAACGATGAATACTAGGTGT 348 |||||||||| ||||||||||| Sbjct 16189011 TGTAAACGATGGATACTAGGTGT 16189033 Score = 82.4 bits (90), Expect = 2e-13 Identities = 104/141 (74%), Gaps = 9/141 (6%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGG--GCTA 62 |||||| |||| |||||| || ||||||||||||| ||||| || ||| | || | Sbjct 17647300 TGAGGAATAAGCATCGGCTAGCTCTGTGCCAGCAGCCGTGGTAAGAC--AGGAGATGCAA 17647357 Query 63 GCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGA 122 | |||||||| ||| ||||| ||||||| || || ||||| ||||| | |||| Sbjct 17647358 GTGTTATCCGAAATGACTGGACGTAAAGCGTCTGTGGGTGG-----CAAGTCCGCCGTGA 17647412 Query 123 AAGGCTATGGCTCAACCCCGG 143 || | | |||||||||| || Sbjct 17647413 AATCCGAGGGCTCAACCCTGG 17647433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203199663104