Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq28 118 2e-24 seq1 118 2e-24 seq5 114 2e-23 seq3 114 2e-23 seq2 87.8 3e-15 seq4 75.2 2e-11 >seq28 Length=135199 Score = 118 bits (130), Expect = 2e-24 Identities = 174/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 94815 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 94874 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| || ||| || |||| ||| Sbjct 94875 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTAA-- 94926 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| ||| Sbjct 94927 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 94985 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 94986 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 95045 Query 249 CCT 251 ||| Sbjct 95046 CCT 95048 Score = 118 bits (130), Expect = 2e-24 Identities = 174/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 119832 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 119773 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| || ||| || |||| ||| Sbjct 119772 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTAA-- 119721 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| ||| Sbjct 119720 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 119662 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 119661 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 119602 Query 249 CCT 251 ||| Sbjct 119601 CCT 119599 >seq1 Length=75119905 Score = 118 bits (130), Expect = 2e-24 Identities = 174/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 35897357 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 35897416 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| || ||| || |||| ||| Sbjct 35897417 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTAA-- 35897468 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| ||| Sbjct 35897469 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 35897527 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 35897528 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 35897587 Query 249 CCT 251 ||| Sbjct 35897588 CCT 35897590 Score = 118 bits (130), Expect = 2e-24 Identities = 174/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 35979415 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 35979474 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| || ||| || |||| ||| Sbjct 35979475 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTAA-- 35979526 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| ||| Sbjct 35979527 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 35979585 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 35979586 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 35979645 Query 249 CCT 251 ||| Sbjct 35979646 CCT 35979648 Score = 118 bits (130), Expect = 2e-24 Identities = 174/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 42074943 GGTGGATACCTAGGCACCCAAAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 42075002 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| || ||| || |||| ||| Sbjct 42075003 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTAA-- 42075054 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| ||| Sbjct 42075055 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 42075113 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 42075114 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 42075173 Query 249 CCT 251 ||| Sbjct 42075174 CCT 42075176 Score = 109 bits (120), Expect = 1e-21 Identities = 172/243 (71%), Gaps = 10/243 (4%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| | ||| | ||| | ||| |||| Sbjct 3922700 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCATAGCAAGCGACGAAATGCTTCGGG 3922641 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| || ||| || |||| ||| Sbjct 3922640 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTAA-- 3922589 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| ||| Sbjct 3922588 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 3922530 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||| ||||||||| || Sbjct 3922529 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGTGAAATGGGAGCAG 3922470 Query 249 CCT 251 ||| Sbjct 3922469 CCT 3922467 >seq5 Length=28563423 Score = 114 bits (126), Expect = 2e-23 Identities = 173/243 (71%), Gaps = 10/243 (4%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 25759051 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 25758992 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| || ||| || |||| ||| Sbjct 25758991 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTAA-- 25758940 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| ||| Sbjct 25758939 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 25758881 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 || ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 25758880 AGTCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 25758821 Query 249 CCT 251 ||| Sbjct 25758820 CCT 25758818 >seq3 Length=59935730 Score = 114 bits (126), Expect = 2e-23 Identities = 173/243 (71%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | | ||| ||||| ||||| | ||| | ||| |||| Sbjct 26503441 GGTGGATACCTAGGCACCCAGTGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 26503500 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||| | ||||| || ||| || |||| ||| Sbjct 26503501 GAGTT-GAAAATAAGCATAGATCTGGAGATTCCCAAATAGGTCAACCT-----TTTAA-- 26503552 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| ||| Sbjct 26503553 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 26503611 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | |||||||| ||||| |||||||||||||||| || Sbjct 26503612 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCATAGTAGCGGCGAGCGAAATGGGAGCAG 26503671 Query 249 CCT 251 ||| Sbjct 26503672 CCT 26503674 >seq2 Length=59384932 Score = 87.8 bits (96), Expect = 3e-15 Identities = 89/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 138 GCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAG 196 ||||||| ||| | | |||| || ||| | |||||||||| |||| ||||| || Sbjct 45674330 GCTGAATCCATGAGCAGGCAAGAGACAACCTGACGAACTGAAAAATCTTAGTAGTCAAAG 45674271 Query 197 GAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 ||||||||| | | | |||||||| ||||| |||||||||||||||| ||||| Sbjct 45674270 GAAAAGAAAGCGAAAGCGATTCCCATAGTAGCGGCGAGCGAAATGGGAGCAGCCT 45674216 >seq4 Length=48772488 Score = 75.2 bits (82), Expect = 2e-11 Identities = 67/84 (80%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 ||||||||| | ||| | || ||| ||||||||||| ||| |||||||| ||||| Sbjct 33244937 GGCGAACTGGAGCATGTTAGAAGCCAGAGGAAAAGAAAGCAAAAACGATTCCCATAGTAG 33244878 Query 228 TGGCGAGCGAAATGGGATGAGCCT 251 |||||||||||||||| ||||| Sbjct 33244877 GGGCGAGCGAAATGGGAGCAGCCT 33244854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918399742848