Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq28 187 8e-45 seq3 187 8e-45 seq1 187 8e-45 seq4 138 4e-30 >seq28 Length=135199 Score = 187 bits (206), Expect = 8e-45 Identities = 395/572 (69%), Gaps = 28/572 (5%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| |||||||||||||||| ||| || ||||| | ||| || | Sbjct 97256 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 97198 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | | | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 97197 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCA 97139 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGA---TCATGGGCCAAGGTTAGATAT 176 ||||| | ||| | |||||||| || | || || |||||||||| || Sbjct 97138 TAGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGCGGGTC-TGACACAAGGTTAGA-AT 97081 Query 177 CC-ACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGC 232 || | | ||||||||||| ||| | | ||| | | || || | |||| Sbjct 97080 CCGAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAGGG-GGCCT- 97023 Query 233 ATCATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAG 290 || | | || ||||||| || | || || || | || |||||| ||| | | || Sbjct 97022 -TCTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAG 96966 Query 291 TGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGC 349 | ||| | | |||||||| |||| | || | | ||||||| || | | Sbjct 96965 TAAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTC 96906 Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTC 408 ||||||||| |||| | ||||||| | || |||||||||| ||||||| |||| Sbjct 96905 TATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTC 96847 Query 409 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468 |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 96846 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTC 96787 Query 469 ACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACC 528 || |||||||| | || || | || || | | |||| | ||| ||| Sbjct 96786 ACCGGGGCTTCGGTCGCCGGCTT------CCCTGTCATCAGTTCACCAACTTCCTTGACC 96733 Query 529 TTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 |||| |||| ||||||||||||| || |||| Sbjct 96732 TTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 96701 Score = 179 bits (198), Expect = 1e-42 Identities = 394/572 (69%), Gaps = 29/572 (5%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| |||||||||||||||| ||| || ||||| | ||| || | Sbjct 117392 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 117450 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | | | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 117451 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCA 117509 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGA---TCATGGGCCAAGGTTAGATAT 176 ||||| | ||| | |||||||| || | || || |||||||||| || Sbjct 117510 TAGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGCGGGTC-TGACACAAGGTTAGA-AT 117567 Query 177 CC-ACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGC 232 || | | ||||||||||| ||| | | ||| | | || || | |||| Sbjct 117568 CCGAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAGGG-GGCCT- 117625 Query 233 ATCATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAG 290 || | | || ||||||| || | || || || | || |||||| ||| | | || Sbjct 117626 -TCTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAG 117682 Query 291 TGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGC 349 | ||| | | |||||||| ||| | || | | ||||||| || | | Sbjct 117683 TAAAGCTTCATAGGGTCTTTCTGTCAGGT-GCAGGTAGTCCGCATCTTCACAGACATGTC 117741 Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTC 408 ||||||||| |||| | ||||||| | || |||||||||| ||||||| |||| Sbjct 117742 TATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTC 117800 Query 409 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468 |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 117801 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTC 117860 Query 469 ACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACC 528 || |||||||| | || || | || || | | |||| | ||| ||| Sbjct 117861 ACCGGGGCTTCGGTCGCCGGCTT------CCCTGTCATCAGTTCACCAACTTCCTTGACC 117914 Query 529 TTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 |||| |||| ||||||||||||| || |||| Sbjct 117915 TTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 117946 >seq3 Length=59935730 Score = 187 bits (206), Expect = 8e-45 Identities = 397/573 (69%), Gaps = 30/573 (5%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| |||||||||||||||| ||| || ||||| | ||| | || Sbjct 26505879 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACC--AATGT 26505822 Query 60 CAACCAGGCT-GAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCC 118 | | | |||| |||| |||||||| |||||||||||| |||||||||| | || ||||| Sbjct 26505821 CCATCTGGCTCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCC 26505763 Query 119 AGTTAAACTACCCACCAGGCACTGTCCCCAACCCAGA---TCATGGGCCAAGGTTAGATA 175 | ||||| | ||| | |||||||| || | || || |||||||||| | Sbjct 26505762 ATAGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGCGGGTC-TGACACAAGGTTAGA-A 26505705 Query 176 TCC-ACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCG 231 ||| | | ||||||||||| ||| | | ||| | | || || | |||| Sbjct 26505704 TCCGAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCAGGCCCCCCCGGAAGGG-GGCCT 26505646 Query 232 CATCATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATA 289 || | | || ||||||| || | | || || | || |||||| ||| | | | Sbjct 26505645 --TCTTCGCCTTCCACCTAAGCTGCGTAGGAAAGGCCC--AAAGCCAATCCCAGGGAACA 26505590 Query 290 GTGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTG 348 || ||| ||| |||||||| ||| | || | | ||||||| || | Sbjct 26505589 GTAAAGCTCCATAGGGTCTTTCTGTCTAGGTGCAGGTAGTCCGCATCTTCACAGACATGT 26505530 Query 349 CAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGT 407 | ||||||||| |||| | ||||||| | || |||||||||| ||||||| ||| Sbjct 26505529 CTATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGT 26505471 Query 408 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTT 467 ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| Sbjct 26505470 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGCTATAGTTACGACCGCCGTT 26505411 Query 468 TACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAAC 527 || |||||||| | ||| || || || | | |||| | ||| || Sbjct 26505410 CACCGGGGCTTCGGT----CGC--CAACTTCCCTGTCATCAGTTCACCAACTTCCTTGAC 26505357 Query 528 CTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 ||||| |||| ||||||||||||| || |||| Sbjct 26505356 CTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 26505324 >seq1 Length=75119905 Score = 187 bits (206), Expect = 8e-45 Identities = 395/572 (69%), Gaps = 28/572 (5%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| |||||||||||||||| ||| || ||||| | ||| || | Sbjct 35981856 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 35981798 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | | | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 35981797 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCA 35981739 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGA---TCATGGGCCAAGGTTAGATAT 176 ||||| | ||| | |||||||| || | || || |||||||||| || Sbjct 35981738 TAGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGCGGGTC-TGACACAAGGTTAGA-AT 35981681 Query 177 CC-ACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGC 232 || | | ||||||||||| ||| | | ||| | | || || | |||| Sbjct 35981680 CCGAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAGGG-GGCCT- 35981623 Query 233 ATCATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAG 290 || | | || ||||||| || | || || || | || |||||| ||| | | || Sbjct 35981622 -TCTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAG 35981566 Query 291 TGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGC 349 | ||| | | |||||||| |||| | || | | ||||||| || | | Sbjct 35981565 TAAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTC 35981506 Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTC 408 ||||||||| |||| | ||||||| | || |||||||||| ||||||| |||| Sbjct 35981505 TATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTC 35981447 Query 409 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468 |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 35981446 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTC 35981387 Query 469 ACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACC 528 || |||||||| | || || | || || | | |||| | ||| ||| Sbjct 35981386 ACCGGGGCTTCGGTCGCCGGCTT------CCCTGTCATCAGTTCACCAACTTCCTTGACC 35981333 Query 529 TTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 |||| |||| ||||||||||||| || |||| Sbjct 35981332 TTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 35981301 Score = 145 bits (160), Expect = 3e-32 Identities = 160/211 (76%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | ||||||| | || |||||||||| ||||||| ||||| Sbjct 65116407 ATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCG 65116349 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | Sbjct 65116348 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCA 65116289 Query 470 CTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCT 529 | |||||||| | || || | || || | | |||| | ||| |||| Sbjct 65116288 CCGGGGCTTCGGTCGCCGGCTT------CCCTGTCATCAGTTCACCAACTTCCTTGACCT 65116235 Query 530 TCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 ||| |||| ||||||||||||| || |||| Sbjct 65116234 TCCGGCACTGGGCAGGCGTCAGCCCCCATAC 65116204 Score = 125 bits (138), Expect = 2e-26 Identities = 102/121 (84%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | ||||||| | || |||||||||| ||||||| ||||| Sbjct 46695843 ATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCG 46695901 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | Sbjct 46695902 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCA 46695961 Query 470 C 470 | Sbjct 46695962 C 46695962 Score = 78.8 bits (86), Expect = 3e-12 Identities = 147/206 (71%), Gaps = 9/206 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| |||||||||||||||| ||| || ||||| | | | || | Sbjct 63154342 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGATC-AATGTC 63154400 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | | | | |||| ||||| || |||||||||||| |||||||||| | | ||||||| Sbjct 63154401 CGTCTGGCCCGAGGAAACCTCTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCA 63154459 Query 120 GTTAAACTACCCACCAGGCACTGTCCC-CAACCC--AGATCATGGGCCAAGGTTAGATAT 176 ||||| | || | |||||||| | ||| || || || |||||||||| || Sbjct 63154460 TAGAAACTGTCTACTTGAGACTGTCCCTCGGCCCGTAGGTC-TGACACAAGGTTAGA-AT 63154517 Query 177 CC-ACTACGGTCAGAGTGGTATTTCA 201 || | | ||||||||||| ||| Sbjct 63154518 CCGAGCTCTTCCAGAGTGGTATCTCA 63154543 >seq4 Length=48772488 Score = 138 bits (152), Expect = 4e-30 Identities = 110/130 (85%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | ||||||| | || |||||||||| ||||||| ||||| Sbjct 7038534 ATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCG 7038476 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | Sbjct 7038475 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCA 7038416 Query 470 CTGGGGCTTC 479 | |||||||| Sbjct 7038415 CCGGGGCTTC 7038406 Score = 91.5 bits (100), Expect = 5e-16 Identities = 112/148 (76%), Gaps = 5/148 (3%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| |||||||||||||||| ||| || ||||| | ||| | || Sbjct 5657660 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACC--AATGT 5657603 Query 60 CAACCAGGCT-GAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCC 118 | | |||| |||| |||||||| |||||||||||| |||||||||| | | |||||| Sbjct 5657602 CCGTCTGGCTCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCC 5657544 Query 119 AGTTAAACTACCCACCAGGCACTGTCCC 146 | ||||| | ||| | |||||||| Sbjct 5657543 ATAGAAACTGTCTACCTGAGACTGTCCC 5657516 Score = 87.8 bits (96), Expect = 6e-15 Identities = 110/147 (75%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| |||||||||||||||| ||| || ||||| | ||| || | Sbjct 7043392 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 7043450 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | | | | |||| |||||||| |||||||||||| |||||||||| | | ||||||| Sbjct 7043451 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCA 7043509 Query 120 GTTAAACTACCCACCAGGCACTGTCCC 146 ||||| | ||| | |||||||| Sbjct 7043510 TAGAAACTGTCTACCTGAGACTGTCCC 7043536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702399523328