Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq28 141 2e-31 seq3 141 2e-31 seq1 141 2e-31 seq4 118 2e-24 >seq28 Length=135199 Score = 141 bits (156), Expect = 2e-31 Identities = 198/279 (71%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| || | Sbjct 91495 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 91447 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| ||| | | |||||||||| || | |||||| ||||| ||| ||||| Sbjct 91446 G------TTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTAGG-CCTTCCACCTCCACGC 91394 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 91393 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 91334 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 91333 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 91274 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 91273 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 91235 Score = 140 bits (154), Expect = 7e-31 Identities = 199/280 (71%), Gaps = 19/280 (7%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| || | Sbjct 123152 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 123200 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| ||| | | |||||||||| || | |||||| ||||| ||| ||||| Sbjct 123201 G------TTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTAGG-CCTTCCACCTCCACGC 123253 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 123254 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 123313 Query 181 GAGTT-TGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCA 239 ||||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| | Sbjct 123314 GAGTTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGA 123373 Query 240 TCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 || | | || ||| || || || | || |||| ||||| Sbjct 123374 TCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 123413 >seq3 Length=59935730 Score = 141 bits (156), Expect = 2e-31 Identities = 198/279 (71%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| || | Sbjct 26500143 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 26500095 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| ||| | | |||||||||| || | |||||| ||||| ||| ||||| Sbjct 26500094 G------TTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTAGG-CCTTCCACCTCCACGC 26500042 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 26500041 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 26499982 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 26499981 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCATCTACTGAT 26499922 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 26499921 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 26499883 Score = 131 bits (144), Expect = 4e-28 Identities = 165/228 (72%), Gaps = 18/228 (8%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| || | Sbjct 32570479 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 32570527 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| ||| | |||||||||| || | |||||| ||||| ||| ||||| Sbjct 32570528 G------TTTCTTCTTCGAGAAAAGAAGTTGACGACCCGTAGG-CCTTCCACCTCCACGC 32570580 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 32570581 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 32570640 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 |||| ||| |||||||||||| ||| ||||| || | ||||||| || Sbjct 32570641 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGA 32570688 >seq1 Length=75119905 Score = 141 bits (156), Expect = 2e-31 Identities = 198/279 (71%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| || | Sbjct 35976095 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 35976047 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| ||| | | |||||||||| || | |||||| ||||| ||| ||||| Sbjct 35976046 G------TTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTAGG-CCTTCCACCTCCACGC 35975994 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 35975993 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 35975934 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | ||||||| || | ||| || Sbjct 35975933 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 35975874 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 35975873 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 35975835 Score = 131 bits (144), Expect = 4e-28 Identities = 168/233 (72%), Gaps = 18/233 (8%) Strand=Plus/Minus Query 4 TGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGTGGA 63 ||||||||| |||||||||||||||||||| | || ||| || || Sbjct 5487654 TGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------TG-- 5487608 Query 64 AGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTAC 123 ||||||| | | |||||||||| || | |||||| ||||| ||| ||||| | Sbjct 5487607 ----TTTATTCTCCGAGAAAAGAAGTTGACGACCCGTAGG-CCTTCCACCTCCACGCGGC 5487553 Query 124 TTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAG 183 | ||| |||| || ||| |||| | || ||||| ||||||| ||||||||||||| Sbjct 5487552 ATTGCTCCGTCAGGCTTTCGCCCATCGCGGAAAATTCCCCACTGCTACCTCCCGTAGGAG 5487493 Query 184 TTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTAT 236 | ||| |||||||||||| ||| ||||| || | |||||||||| | |||| Sbjct 5487492 TCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTAT 5487440 Score = 109 bits (120), Expect = 1e-21 Identities = 145/200 (73%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 46315172 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 46315113 Query 165 CTGCTGCCTCCC-GTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTC 223 |||||||| ||| || ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 46315112 CTGCTGCCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGA 46315053 Query 224 TCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAA 283 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| | Sbjct 46315052 AAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTA 46314993 Query 284 CGCATCCCCATCGTACACCG 303 |||| | |||| ||| || Sbjct 46314992 CGCAGGCTCATCAAACAGCG 46314973 >seq4 Length=48772488 Score = 118 bits (130), Expect = 2e-24 Identities = 193/279 (69%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||| ||||||| |||||||||||||||||||| | || ||| || | Sbjct 19631499 GGCTACTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 19631547 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| ||| | | |||||||||| || | |||||| ||||| ||| || || Sbjct 19631548 G------TTTCTTCTCCGAGAAAAGAAGTTGACGACCCGTAGG-CCTTCCACCTCCATGC 19631600 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| | |||||||||||| ||| Sbjct 19631601 AGCATTGCTCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCCGCTGCTGCCTCCCATAG 19631660 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||| || || | ||| || Sbjct 19631661 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTTTCGGACCAGCTACTGAT 19631720 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 19631721 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 19631759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068799700736