Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brachypodium_20distachyon_20[refseq_20GCF_5F000005505.2_202015-10- 29] 28 sequences; 272,132,505 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 167 2e-36 >seq1 Length=75119905 Score = 167 bits (184), Expect = 2e-36 Identities = 546/842 (65%), Gaps = 21/842 (2%) Strand=Plus/Plus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || ||||||||||||| ||||||||| || | ||| ||| | Sbjct 42405653 TACAAGAAGGCGGTGGCGTCCTTCTGGACGGCGGAGGAGGTGGACCTCTCCTCCGACGCG 42405712 Query 61159 AATGACTGGGAG----CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||||||| || | || | || || | || ||| | || ||| | || Sbjct 42405713 CGCCACTGGGACACCACGCTG-TCCAACGACGAGCGCCACTTCGTCTCCCACGTGCTCGC 42405771 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || ||||| |||||| ||||| | | || ||| | || Sbjct 42405772 CTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCGTCCCGGTTCATGTCCGA 42405831 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || || || | ||||| || ||||||||||||||||| ||||| ||||| |||| Sbjct 42405832 CGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCA 42405891 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 ||| ||||||||| | || ||||| || |||||| ||||| | || || || Sbjct 42405892 CTCTGAGATGTACTCCCTGCTTATCGAGACCTACATCCGGGAGGACGTCGAGAAGGACCG 42405951 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 | ||| ||| |||| || || || || ||| || || || || |||||| | Sbjct 42405952 TCTTTTCCGCGCCGTCGACACCATCCCCGCCGTGCGCCGCAAGGCCGAATGGGCCATGCG 42406011 Query 61455 TTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 |||||| || |||| | |||| || || || | || || || ||| Sbjct 42406012 CTGGATC-----GACGGCGGCGAGCGCTTTGCCGAGCGCCTGGTCGCCTTCGCCTGCGTC 42406066 Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 ||||| |||| ||| || || || ||| ||||| ||| | ||||| || || || Sbjct 42406067 GAGGGGATATTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTC 42406126 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632 ||||| || || || ||| ||| ||| | || || |||||||| ||| |||| || || Sbjct 42406127 ATGCCGGGCCTAACTTTCTCCAACGAGCTTATCTCCCGCGACGAAGGCCTGCACTGCGAC 42406186 Query 61633 TTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAG---CGTGTG 61689 ||||| | || || ||| ||| | | | | ||| ||| || || Sbjct 42406187 TTTGC---CTGCCTCCTC-TACGACATCCTCCGGA--GCAAGCTGGACGAGTCACGCGTC 42406240 Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCC 61749 ||||||| || | || || || ||||| ||| ||| | ||||| | || Sbjct 42406241 CGTGAGATCGTCGGCGACGCCGTTGACATCGAGAGGGAGTTTGTCTGCGACGCGCTCCCT 42406300 Query 61750 GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGAC 61809 | | ||| | |||||||| | | || ||| ||||| || || || || || ||| Sbjct 42406301 TGCGCTCTCGTGGGCATGAACGGCGACCTTATGAGCCAGTACATCGAGTTCGTCGCGGAC 42406360 Query 61810 CGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTC 61869 || ||| | | | |||| ||| ||| || || | | ||||||||| || | Sbjct 42406361 CGCCTGCTCATGGCGCTGGGCTGCAAGAAGATGTACAACGCCACAAACCCATTCGACTGG 42406420 Query 61870 ATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929 ||||| |||| || ||| | || ||||| ||||| |||||||| ||||| || ||||| Sbjct 42406421 ATGGAGCTGATCTCCCTGCAGGGAAAGACCAATTTCTTCGAGAAGCGTGTTGGAGACTAC 42406480 Query 61930 CA 61931 || Sbjct 42406481 CA 42406482 Score = 129 bits (142), Expect = 5e-25 Identities = 542/845 (64%), Gaps = 27/845 (3%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || ||||||||||||| |||||||| || | ||| ||| | Sbjct 54133461 TACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAGGAGGTGGACCTCTCCTCGGACGCG 54133402 Query 61159 AATGACTGGGA---GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 ||||||| | | || || || | || ||||| || ||| | || Sbjct 54133401 CGCCACTGGGACGAGACGCTCTCCCCCGACGAGCGCCACTTCATCTCCCACGTGCTCGCC 54133342 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| ||||| || ||||| ||||| ||||| | || ||| | || Sbjct 54133341 TTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCCGGTTCATGTCCGAC 54133282 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 ||||| ||| | ||||| || ||||||||||||||||| ||||| ||||| ||||| Sbjct 54133281 GTGCAGGTGGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCAC 54133222 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAACG 61394 |||||||||||| | || |||| || |||||| | || || | || | | || || Sbjct 54133221 TCGGAGATGTACTCCCTGCTGCTCGAGACCTACATCCGCGACGCCGCCGAGAAG-GACCG 54133163 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 | ||| ||| |||| || | || || || || || || | ||| || | Sbjct 54133162 CCTCTTCCGCGCCGTCGACACCGTCCCCGCCGTCCGCCGCAAGGCCGTCTGGTCCATGCG 54133103 Query 61455 TTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 |||||| | |||| | || | || || | | || || || ||| Sbjct 54133102 CTGGATC-----GAAGGCGGCGAGCGCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTC 54133048 Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 ||||| | || ||| || || || ||| ||||| ||| | ||||| ||||| || Sbjct 54133047 GAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGTGGTCTC 54132988 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGAT 61632 ||||| || || |||||| ||| ||| | || || ||||||||||| |||| || || Sbjct 54132987 ATGCCGGGGCTCACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGGCTGCACTGCGAC 54132928 Query 61633 TTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAG---CGTGTG 61689 || || | || || | | | || | || | | |||||| || || Sbjct 54132927 TTCGC---CTGCCTCCTCTA---CGAACTCCTCAACGGCAAGCTCGAGGAGTCCCGCGTC 54132874 Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGC 61747 | ||||| || || || || ||||| ||| || |||| |||||| ||| Sbjct 54132873 CGCGAGATCGTCGCCGACGCCGTTGACATCGAGAGGGAGTTCATCTG--CGACGCTCTGC 54132816 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCG 61807 | | ||| |||||||||| ||||| ||| ||||| || || || || |||| Sbjct 54132815 CATGTGCCCTCGTCGGCATGAACGCCGGACTCATGGGCCAGTACATCGAGTTCGTCGCCG 54132756 Query 61808 ACCGTCTGTTGGTCGATTTGGGTATGAAGC-GGATCTATAATACGAAAAACCCATTTGAT 61866 |||| ||| | | | |||| || ||| ||| || || | ||||| || || Sbjct 54132755 ACCGCCTGCTCACGGCTCTGGG-GTGCAGCAAGATGTACAACGCCGTCAACCCGTTCGAC 54132697 Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGAC 61926 | ||||| | || |||||| | |||||||| || || |||||||| || || |||||| Sbjct 54132696 TGGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAC 54132637 Query 61927 TATCA 61931 || || Sbjct 54132636 TACCA 54132632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567864329920