Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq15820 87.8 2e-15 seq13312 87.8 2e-15 seq7579 87.8 2e-15 seq4 87.8 2e-15 seq3 87.8 2e-15 seq2 87.8 2e-15 seq6 86.0 7e-15 seq5 77.0 3e-12 >seq15820 Length=79755 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | | ||| || Sbjct 61290 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCGCAAAAGG 61231 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 61230 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 61182 >seq13312 Length=299805 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | | ||| || Sbjct 206658 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCGCAAAAGG 206717 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 206718 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 206766 >seq7579 Length=2211 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | | ||| || Sbjct 1139 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCGCAAAAGG 1198 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 1199 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 1247 >seq4 Length=191835039 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | | ||| || Sbjct 174539299 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCGCAAAAGG 174539240 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 174539239 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 174539191 >seq3 Length=300915289 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | | ||| || Sbjct 58656166 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCGCAAAAGG 58656107 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 58656106 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 58656058 Score = 75.2 bits (82), Expect = 1e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTT-GAGTGAATCACGGTTAA 82 ||||| |||||| || | || || ||||||| ||||| | ||| ||| || | || Sbjct 136608228 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCGTCGAGAGAACCATGTGGAA 136608169 Query 83 GGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 |||||| |||||| |||||| |||||||||||| || |||| Sbjct 136608168 GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 136608128 >seq2 Length=243061704 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | | ||| || Sbjct 34152321 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCGCAAAAGG 34152262 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 34152261 G-GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 34152213 Score = 75.2 bits (82), Expect = 1e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTT-GAGTGAATCACGGTTAA 82 ||||| |||||| || | || || ||||||| ||||| | ||| ||| || | || Sbjct 33123323 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCGTCGAGAGAACCATGTCGAA 33123264 Query 83 GGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 |||||| |||||| |||||| |||||||||||| || |||| Sbjct 33123263 GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 33123223 >seq6 Length=240577051 Score = 86.0 bits (94), Expect = 7e-15 Identities = 90/117 (77%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| || | | ||| || Sbjct 179750086 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCCCCTCGCAAAAGG 179750145 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | || ||||| || ||| || | | |||||||| |||||||||||| || ||| || Sbjct 179750146 G-GGTCGCAGTGACCAGGCCCGGTCGACTGTTTACCAAAAACACAGGTCTCTGCAAA 179750201 >seq5 Length=158699395 Score = 77.0 bits (84), Expect = 3e-12 Identities = 124/173 (72%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAA-TCACGGTTAAG 83 |||| |||||| || | ||| || |||| ||| || ||| || |||| | ||| Sbjct 46156175 AAACCGACACAGGTGGGTAGGTAGAGAATACCTAGGGGCGCGAGACAACTCACTCT-AAG 46156233 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGG 143 ||||| ||||| | || ||||||||||||| || |||| || | || ||| | | || Sbjct 46156234 GAACTCAGCAAAATAGCCATGTAACTTCGGGAGAAGGGGTGCCCCCTCACAAAAGAG-GG 46156292 Query 144 GCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | ||| | ||||| | || |||||||| |||||||||||| || ||| || Sbjct 46156293 TCACAGTG-ATAGGCCTGGGTGACTGTTTACCAAAAACACAGGTCTCTGCAAA 46156344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531095078206