Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq4 141 1e-31 seq16803 136 4e-30 seq5 136 4e-30 seq2 136 4e-30 seq12131 122 9e-26 >seq4 Length=191835039 Score = 141 bits (156), Expect = 1e-31 Identities = 146/187 (78%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACAT 63 |||| || |||||||||| ||||||||| |||||||||| ||| | |||| | |||||| Sbjct 184578553 CCAGTGCTGTTACTTTGAAGAAATTAGAGTGTTCAAAGCAAGCCATCGCTCTGGATACAT 184578612 Query 64 TACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG 123 || ||||| |||| | |||||| | ||| ||||| ||| || | ||| || | Sbjct 184578613 TAGCATGGGATAACATCATAGGAT-TCTGGTCCTATTGTGTTGGCCTTCGGGATCGGA-G 184578670 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| |||| ||| ||||||||| | ||||| ||||||| |||||||||||||| Sbjct 184578671 TAATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTG 184578730 Query 184 GATTTAT 190 ||||||| Sbjct 184578731 GATTTAT 184578737 Score = 132 bits (146), Expect = 5e-29 Identities = 141/182 (77%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||| Sbjct 190809539 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCAT 190809480 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 190809479 GGGATAACATCATAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 190809422 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | |||| ||| ||||||||| | ||||| || | || |||||||||||||||||||| Sbjct 190809421 TTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGCCAGAGGTGAAATTCTTGGATTTA 190809362 Query 190 TT 191 || Sbjct 190809361 TT 190809360 Score = 131 bits (144), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | || ||||| ||| | |||| | |||||||| ||| Sbjct 184570540 CTGTTACTTTGAAGAAATTAGAGTGCTCGAAGCAAGCCATCGCTCTGGATACATTAGCAT 184570599 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | |||| || ||||||| Sbjct 184570600 GGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCAGGATCGGA-GTAATGA 184570657 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | |||| ||| |||| |||| | ||||| || |||| |||||||||||||||||||| Sbjct 184570658 TTAATAGGGACAGTCAGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 184570717 Query 190 T 190 | Sbjct 184570718 T 184570718 Score = 118 bits (130), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| |||||||| | |||||||| ||| | | || | |||||||| ||||| Sbjct 190801372 TTACTTTGAAGAAATTAGAATGCTCAAAGCAAGCCATCGTTCTGGATACATTAGCATGGG 190801313 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 190801312 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 190801255 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191 ||| ||| ||||||||| | |||| || | || |||||||||||||||||||||| Sbjct 190801254 ATAGGGACAGTCGGGGGCATTCCTATTTCATAGCCAGAGGTGAAATTCTTGGATTTATT 190801196 Score = 93.3 bits (102), Expect = 4e-17 Identities = 113/150 (75%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 42 GCAGGCCTTTGCTC-GAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATT 100 ||| ||| | |||| | |||||||| ||||| |||| | |||||| | |||| ||||| Sbjct 184585043 GCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAGGAT-TCCGGTCCTATT 184585101 Query 101 TTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTC 160 ||| | |||| | |||||||| |||| ||||||||||||| | || || Sbjct 184585102 GTGTTGCCCATCAGGATCAGA-GTAATGATTAATAGGGATAGTCGGGGGCATTCGTGTTT 184585160 Query 161 AATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||||||| ||||||||||||||||||||| Sbjct 184585161 CATTGTCAGAGGTGAAATTCTTGGATTTAT 184585190 >seq16803 Length=2522 Score = 136 bits (150), Expect = 4e-30 Identities = 141/181 (78%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||| Sbjct 2181 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCAT 2122 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 2121 GGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 2064 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | |||| ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 2063 TTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 2004 Query 190 T 190 | Sbjct 2003 T 2003 >seq5 Length=158699395 Score = 136 bits (150), Expect = 4e-30 Identities = 141/181 (78%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||| Sbjct 133537 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCAT 133596 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 133597 GGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 133654 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | |||| ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 133655 TTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 133714 Query 190 T 190 | Sbjct 133715 T 133715 Score = 136 bits (150), Expect = 4e-30 Identities = 141/181 (78%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||| Sbjct 1605589 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCAT 1605530 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 1605529 GGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 1605472 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | |||| ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 1605471 TTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 1605412 Query 190 T 190 | Sbjct 1605411 T 1605411 Score = 136 bits (150), Expect = 4e-30 Identities = 141/181 (78%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||| Sbjct 72926118 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCAT 72926059 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 72926058 GGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 72926001 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | |||| ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 72926000 TTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 72925941 Query 190 T 190 | Sbjct 72925940 T 72925940 Score = 131 bits (144), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||| Sbjct 1577112 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCAT 1577053 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 1577052 GGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 1576995 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | |||| ||| ||||||||| | ||||| || |||| ||||||||| |||||||||| Sbjct 1576994 TTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATACTTGGATTTA 1576935 Query 190 T 190 | Sbjct 1576934 T 1576934 Score = 125 bits (138), Expect = 7e-27 Identities = 141/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATT 64 |||| || |||||||||| ||||||||| | |||||||| ||| | ||| | ||||||| Sbjct 10545983 CCAGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTTGGATACATT 10546042 Query 65 ACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGT 124 | ||||| |||| | |||||| | || | ||||| ||| || | ||| || || Sbjct 10546043 AGCATGGGATAACATCATAGGAT-TCCGATCCTATTGTGTTGGCCTTCGGGATCGGA-GT 10546100 Query 125 AATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGG 184 |||||| |||| ||| ||||||||| | ||||| || |||| ||| ||||||||||| Sbjct 10546101 AATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGAGAAATTCTTGG 10546160 Query 185 ATTTAT 190 | |||| Sbjct 10546161 ACTTAT 10546166 Score = 122 bits (134), Expect = 9e-26 Identities = 138/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || ||| |||| | ||||||||| | |||||||| || | |||| | |||||||| || Sbjct 16804202 CTGTTATTTTGCAGAAATTAGAGTGCTCAAAGCAATCCATCGCTCTGGATACATTAGTAT 16804261 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | |||| || ||||||| Sbjct 16804262 GGGATAACATCATAGGATTT-CGGTCCTATTATGTTGGCCTTCAGGATCGAA-GTAATGA 16804319 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | |||| ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 16804320 TTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 16804379 Query 190 T 190 | Sbjct 16804380 T 16804380 Score = 75.2 bits (82), Expect = 1e-11 Identities = 84/110 (76%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 81 ATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGAT 140 |||||| | |||| ||||| ||| || | ||| || |||||||| |||| ||| Sbjct 10468688 ATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTAATAGGGAC 10468745 Query 141 AGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 10468746 AGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 10468795 >seq2 Length=243061704 Score = 136 bits (150), Expect = 4e-30 Identities = 141/181 (78%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||| Sbjct 187248041 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCAT 187247982 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 187247981 GGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 187247924 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | |||| ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 187247923 TTAATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 187247864 Query 190 T 190 | Sbjct 187247863 T 187247863 Score = 113 bits (124), Expect = 5e-23 Identities = 134/178 (75%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGA-ATACATTACCATGGA 72 |||||||||| ||||||||| | | |||||| ||| | ||| |||||||| ||||| Sbjct 186383507 TTACTTTGAAGAAATTAGAGTGCTTAAAGCAAGCCATCACTCTTGATACATTAGCATGGG 186383566 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | | || | |||||||| | Sbjct 186383567 ATAACATCATAGGATTT-CGGTCCTATTGTGTTGGCCTTTGGGTTGGA--GTAATGATTA 186383623 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| ||| | ||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 186383624 ATAGGGACAATCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 186383681 >seq12131 Length=26016 Score = 122 bits (134), Expect = 9e-26 Identities = 138/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||| Sbjct 1607 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCAT 1548 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | ||| || | |||| || || ||| || | ||| || ||||||| Sbjct 1547 GGGATAACATCATAAGAT-TCCGGTCCTGTTGTGTTGGCCTTCGGGATCGGA-GTAATGA 1490 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | |||| ||| ||||||||| | |||| || |||| |||||||||||||||||||| Sbjct 1489 TTAATAGGGACAGTCGGGGGCATTCATATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 1430 Query 190 T 190 | Sbjct 1429 T 1429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511898870560