Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq12525 206 5e-51 seq3 123 5e-26 seq15820 118 2e-24 seq13312 118 2e-24 seq2 118 2e-24 seq410 111 3e-22 seq7 93.3 8e-17 seq5 91.5 3e-16 >seq12525 Length=4139 Score = 206 bits (228), Expect = 5e-51 Identities = 245/326 (75%), Gaps = 11/326 (3%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||| |||||||||||||||| | | |||||||||| ||||| |||| ||||| | Sbjct 2960 AGTGCATGTGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGATAGCCTGCGAAA 2901 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| ||||||| ||||| | |||||||||| ||||||| |||||||| ||||| | Sbjct 2900 AGCTCCGGGGAGGCGGCAAATATCCTTTGATCCGGAGATTTCTGAATGGGGGAACCCACC 2841 Query 121 C-CTTT-----GGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAAC 174 | || | |||| || | |||||||||||||| | ||||||||| || ||| Sbjct 2840 CGCTATAAGGCGGGT-ATCATAAACTGAATACATAGGTTTATGAAGCGAACGAGGGGAAG 2782 Query 175 TGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234 |||||||||| |||| | ||||||||||||||| ||||||||| ||||| |||||| Sbjct 2781 TGAAACATCTCAGTACCCTTAGGAAAAGAAATCAATTGAGATTCCCTTAGTAGCGGCGAG 2722 Query 235 CGAAATGGGATGAG-CCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAG 293 |||| |||| || || ||| || || || || |||||||| |||||| || | Sbjct 2721 CGAACGGGGAGCAGCCCATTA--AGTTATGTGTGTT-TTAGTGGAACGCTCTGGGAAGTG 2665 Query 294 GAGCCATAGCGGGTGATAGCCCCGTA 319 | ||| |||||||| |||||| Sbjct 2664 CGAACGTAGAGGGTGATATTCCCGTA 2639 >seq3 Length=300915289 Score = 123 bits (136), Expect = 5e-26 Identities = 175/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 48277295 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 48277354 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| || ||| || |||| |||| Sbjct 48277355 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTGA-- 48277406 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| ||||||||||||||||| ||| Sbjct 48277407 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 48277465 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 48277466 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 48277525 Query 249 CCT 251 ||| Sbjct 48277526 CCT 48277528 Score = 118 bits (130), Expect = 2e-24 Identities = 174/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 58657923 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 58657864 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| || ||| || |||| |||| Sbjct 58657863 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTGA-- 58657812 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| || |||||||||||||| ||| Sbjct 58657811 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGTGAACTGAAACATCTTAGT 58657753 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 58657752 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 58657693 Query 249 CCT 251 ||| Sbjct 58657692 CCT 58657690 Score = 114 bits (126), Expect = 2e-23 Identities = 173/243 (71%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 48259432 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 48259491 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| || ||| || |||| |||| Sbjct 48259492 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTGA-- 48259543 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| || |||||||||||||| ||| Sbjct 48259544 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGTGAACTGAAACATCTTAGT 48259602 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| | ||| |||||||||||||||| || Sbjct 48259603 AGCCAGAGGAAAAGAAAGCAAAAGTGATTCCCGTAATAGCGGCGAGCGAAATGGGAGCAG 48259662 Query 249 CCT 251 ||| Sbjct 48259663 CCT 48259665 >seq15820 Length=79755 Score = 118 bits (130), Expect = 2e-24 Identities = 174/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 63047 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 62988 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| || ||| || |||| |||| Sbjct 62987 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTGA-- 62936 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| || |||||||||||||| ||| Sbjct 62935 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGTGAACTGAAACATCTTAGT 62877 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 62876 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 62817 Query 249 CCT 251 ||| Sbjct 62816 CCT 62814 >seq13312 Length=299805 Score = 118 bits (130), Expect = 2e-24 Identities = 174/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 204901 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 204960 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| || ||| || |||| |||| Sbjct 204961 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTGA-- 205012 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| || |||||||||||||| ||| Sbjct 205013 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGTGAACTGAAACATCTTAGT 205071 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 205072 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 205131 Query 249 CCT 251 ||| Sbjct 205132 CCT 205134 >seq2 Length=243061704 Score = 118 bits (130), Expect = 2e-24 Identities = 174/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||| | ||| | ||| |||| Sbjct 34154078 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGG 34154019 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| || ||| || |||| |||| Sbjct 34154018 GAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTGA-- 34153967 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| | | |||| || ||| || |||||||||||||| ||| Sbjct 34153966 -ACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGTGAACTGAAACATCTTAGT 34153908 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 34153907 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 34153848 Query 249 CCT 251 ||| Sbjct 34153847 CCT 34153845 Score = 75.2 bits (82), Expect = 2e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 33125397 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGAAAATCAACCGAGATCCCGTTAGTAGC 33125338 Query 229 GGCGAGCGA 237 ||||||||| Sbjct 33125337 GGCGAGCGA 33125329 >seq410 Length=1208 Score = 111 bits (122), Expect = 3e-22 Identities = 125/164 (76%), Gaps = 10/164 (6%) Strand=Plus/Plus Query 89 GATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACAT 148 |||||| ||||| |||||| || |||| |||| | ||| |||||||| ||| Sbjct 680 GATCCGGAGATTCCCGAATAGGTTAACCT-----TTTGA---ACTGC-TGCTGAATCCAT 730 Query 149 AGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATC 207 || | |||| || ||| ||||||||||||||||| |||||| ||||||||||| | Sbjct 731 GGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGC 790 Query 208 AACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 || | ||||||| ||||| |||||||||||||||| ||||| Sbjct 791 AAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 834 >seq7 Length=154015841 Score = 93.3 bits (102), Expect = 8e-17 Identities = 91/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| | | |||| || ||| || |||||||||||||| |||||| | Sbjct 19023880 TGCTGAATCCATGAGCAGGCAAGAGACAACCTGGTGAACTGAAACATCTTAGTAGCCAGA 19023821 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||||| ||| | ||||||| ||||| || ||||||||||||| ||||| Sbjct 19023820 GGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGTGAGCGAAATGGGAGCAGCCT 19023765 >seq5 Length=158699395 Score = 91.5 bits (100), Expect = 3e-16 Identities = 174/248 (70%), Gaps = 19/248 (8%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAA---GCTGC 66 ||||||| ||| ||| | || ||| ||||| ||||| | ||||| | ||| | Sbjct 105680441 GGTGGATACCTAGGCACCCAAAGACGAGGAAGGGCGTAGCAA---GCGATGAAATGCTTC 105680497 Query 67 GGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTG 126 ||||| | ||| | | | |||||| ||||| || ||| || |||| |||| Sbjct 105680498 AAGGAGTT-GAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCT-----TTTG 105680551 Query 127 GGTCATTGCATGCTGAA-TACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCT 184 | | | ||||||| | ||| | | |||| || ||| || |||||||||||||| Sbjct 105680552 A---ACTTCCTGCTGAAATCCATGAGCAGGCAATAGACAACCTGGTGAACTGAAACATCT 105680608 Query 185 AAGTAG-CTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGG 243 ||||| | | ||| ||||||| ||| | |||||||| ||||| ||||||||||||||| Sbjct 105680609 TAGTAGACAGAAGG-AAAGAAAGCAAAAGTGATTCCCATAGTAGCGGCGAGCGAAATGGG 105680667 Query 244 ATGAGCCT 251 | ||||| Sbjct 105680668 AGCAGCCT 105680675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918212747424