Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cenchrus_20americanus_20[genbank_20GCA_5F002174835.1_202017-06-07] 20,389 sequences; 1,794,547,441 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 168 5e-37 seq2 141 7e-29 >seq3 Length=300915289 Score = 168 bits (186), Expect = 5e-37 Identities = 547/840 (65%), Gaps = 17/840 (2%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || ||||||||||||| |||||||| || | ||| ||| | Sbjct 250096450 TACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAGGAGGTTGACCTCTCCGCCGACGCG 250096391 Query 61159 AATGACTGGGA-GCGTT--TATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 ||||||| ||| | || | || || | || ||||| || ||| | || Sbjct 250096390 CGCCACTGGGACGCGGCGCTCTCCAACGACGAGCGCCACTTCATCTCTCACGTGCTCGCC 250096331 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| ||||| || ||||| ||||| ||||| | || ||| | || Sbjct 250096330 TTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCCGCTTCATGTCCGAC 250096271 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || || || | |||||||| ||||||||||||||||| ||||| ||||| ||||| Sbjct 250096270 GTCCAGGTCGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCAC 250096211 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA 61395 |||||||||||| | || |||| ||||||||| | || | || || || || Sbjct 250096210 TCGGAGATGTACTCGCTGCTGCTCGAGACGTACATCCGCGATGGCGCCGAGAAGGACCGC 250096151 Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 | ||| ||| |||| || || || || ||| || || || || |||||| | Sbjct 250096150 CTCTTCCGCGCCGTCGACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGC 250096091 Query 61456 TGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 |||||| || ||| | || | || || | | || || || |||| Sbjct 250096090 TGGATC-----GACGGCGGGGAGCGCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCG 250096036 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | || ||| || || || ||| ||||| ||| | ||||| || || || | Sbjct 250096035 AGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCA 250095976 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| || || |||||| ||| ||| | || || |||||||||||| | ||||| || | Sbjct 250095975 TGCCGGGGCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCATTGCGACT 250095916 Query 61634 TTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTG 61693 | || | || | | | | | || | | | | || | ||||| ||||| | | Sbjct 250095915 TCGCCTGCCTCCTCTACGACCTC-CTCCGCAGCA-AGCTCGAC-GAGGACCGTGTCCGCG 250095859 Query 61694 AGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGT 61751 |||| || || || || ||||| | || || |||| ||||| | ||||| Sbjct 250095858 AGATCGTCGCCGACGCCGTTGACATCGAGCGCGAGTTCGTCTG--CGACGCGCTCCCCGT 250095801 Query 61752 CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCG 61811 | | ||| |||||||||| | || || ||| ||||| || || || || |||||||| Sbjct 250095800 CGCGCTCGTCGGCATGAACGGCGGGCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCG 250095741 Query 61812 TCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCAT 61871 ||| | | | |||| ||| ||| || || |||||||| || | || Sbjct 250095740 CCTGCTCATGGCGCTGGGGCACAAGAAGATGTACAACGTCGCCAACCCATTCGACTGGAT 250095681 Query 61872 GGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| | || |||||| | |||||||| || || |||||||| || || || || || || Sbjct 250095680 GGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGGGAGTACCA 250095621 >seq2 Length=243061704 Score = 141 bits (156), Expect = 7e-29 Identities = 543/841 (65%), Gaps = 19/841 (2%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || ||||||||||||| || ||||| || ||||| ||| Sbjct 119861443 TACAAGAAGGCGGTGGCGTCCTTCTGGACGGCCGAAGAGGTGGACCTGTCCGCCGACGCC 119861384 Query 61159 AATGACTGGGA-GCGTTTATCGAGC--GGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 ||||||| | || || | | || | || ||||| || || |||| Sbjct 119861383 CGCCACTGGGACGAGTCCCTCTCCCCTGACGAGCGCCACTTCATCTCCCACGTCCTGGCC 119861324 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| ||||| || ||||| ||||| ||||| | | || ||| | || Sbjct 119861323 TTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCGTCGCGCTTCATGTCCGAC 119861264 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 ||||| || | ||||| || ||||||||||||||||| ||||| ||||| ||||| Sbjct 119861263 GTGCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCAC 119861204 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGA 61395 |||||||||||| | || |||| || |||||| | || | || || || || Sbjct 119861203 TCGGAGATGTACTCGCTGCTGCTCGAGACTTACATCCGCGACGGCGCCGAGAAGGACCGC 119861144 Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 | ||| |||||||| || | || || || || || ||||| |||||| | Sbjct 119861143 CTTTTCCGCGCCATCGACACCGTCCCCGCCGTCCGCCGCAAGGCGGACTGGGCCATGCGG 119861084 Query 61456 TGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 |||||| || ||| | || | || ||| | | || || || |||| Sbjct 119861083 TGGATC-----GACGGCGGGGAGCGCTTCGCCGAGCGACTCGTCGCGTTCGCCTGCGTCG 119861029 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | || ||| || || || ||| ||||| ||| | ||||| || || || | Sbjct 119861028 AGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGGCTCA 119860969 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| || || |||||| ||| ||| | || || |||||||||||| |||| || || | Sbjct 119860968 TGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACT 119860909 Query 61634 TTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTG 61693 | || | || | | | | | || | | | | || | ||| || || | | Sbjct 119860908 TCGCGTGCCTCCTCTACGAGCTC-CTCCGCAGCA-AGCTCGAC-GAGTCCCGCGTCCGCG 119860852 Query 61694 AGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGT 61751 |||| || || || || ||||| | || || |||| ||||| | ||||| Sbjct 119860851 AGATCGTCGCCGACGCCGTGGACATCGAGCGCGAGTTCGTCTG--CGACGCGCTCCCCGT 119860794 Query 61752 CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCG 61811 | | ||| |||||||||| | | || ||| |||| || || || || |||||||| Sbjct 119860793 CGCGCTCGTCGGCATGAACGGCGCGCTCATGAGCGAGTACATCGAGTTCGTCGCCGACCG 119860734 Query 61812 TCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCA 61870 ||| | | | | | |||| || ||| || || | ||||| || || | | Sbjct 119860733 CCTGCTCATGGCACTAGGGT-GCAACAAGATGTACAACGCCGCCAACCCCTTCGACTGGA 119860675 Query 61871 TGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATC 61930 |||| | || |||||| | |||||||| || || |||||||| ||||| || ||||| | Sbjct 119860674 TGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACC 119860615 Query 61931 A 61931 | Sbjct 119860614 A 119860614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397469207954960