Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq72902 230 6e-58 seq40833 188 2e-45 seq27239 114 3e-23 seq11244 105 2e-20 seq13183 102 2e-19 seq52528 96.9 9e-18 seq25665 75.2 3e-11 >seq72902 Length=152221 Score = 230 bits (254), Expect = 6e-58 Identities = 297/409 (73%), Gaps = 2/409 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 103070 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 103129 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | ||| | | || Sbjct 103130 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 103189 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 103190 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 103249 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 103250 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 103309 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| |||||||||| | Sbjct 103310 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGG 103369 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||||| | || | | | Sbjct 103370 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 103429 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 103430 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 103478 Score = 230 bits (254), Expect = 6e-58 Identities = 297/409 (73%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 134261 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 134202 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | ||| | | || Sbjct 134201 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 134142 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 134141 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 134082 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 134081 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 134022 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| |||||||||| | Sbjct 134021 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGG 133962 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||||| | || | | | Sbjct 133961 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 133902 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 133901 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 133853 >seq40833 Length=287482 Score = 188 bits (208), Expect = 2e-45 Identities = 286/405 (71%), Gaps = 3/405 (1%) Strand=Plus/Plus Query 7 TGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGC 66 ||| ||||||||| ||||||||| ||||||||| |||| |||| || ||| ||||||| Sbjct 25413 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCATCCGCAGTAAGACAGAGGATGCAAGC 25472 Query 67 GTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAA 126 |||| |||||| | |||||||||||||| | ||| || | | ||| | | || ||| Sbjct 25473 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 25532 Query 127 TCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGG 186 ||| ||||| |||| ||| || | | ||| | ||||||| | || || Sbjct 25533 TCCTAGGGCTCAACCCTGGACAAGCGGTGGAAACTACCAAGCTAGAGTACGGTAGGGGAA 25592 Query 187 GGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAA 246 | |||||| | ||| | | |||||||||||||| || | ||||||||| |||||| Sbjct 25593 GAGGGAATTTCCGGTGGATCGGTGAAATGCGTAGAGATCGAAAAGAACACCAACGGCGAA 25652 Query 247 GGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATT 306 ||| | ||||| |||||||| || | |||||||| |||||| ||| ||||| Sbjct 25653 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGAAAATGGGATT 25712 Query 307 AGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCT 366 |||||||| |||||| ||| |||||||| ||||| | || | | | || Sbjct 25713 AGATACCC-AGTAGTCGTAGCCATAAACGATGGATACTAGGCGCTGTGCGTATCGACCCG 25771 Query 367 TG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || ||||||||| ||| |||| | ||||||||| ||| Sbjct 25772 TGCAGTGCTGTAGCTAACACGTTAAGTATCCTGCCTGGGGAGTAC 25816 >seq27239 Length=826133 Score = 114 bits (126), Expect = 3e-23 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 167 ACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGT 226 ||| ||||| | |||||| | |||||||| | ||||| ||||||| ||||||| | Sbjct 7891 ACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTTTGTAGGGGTGAAATCCGTAGATCTAC 7950 Query 227 GGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAG 286 | ||||| |||| ||||||||||| | ||||| || |||||| | |||||| Sbjct 7951 GAAGGAATGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAG 8010 Query 287 CGTGGGGAGCAAACAGGATTAGATACCCTGG 317 | |||||||| |||||||||||||||||||| Sbjct 8011 CATGGGGAGCGAACAGGATTAGATACCCTGG 8041 >seq11244 Length=389271 Score = 105 bits (116), Expect = 2e-20 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| ||| ||||||||| |||| || | | ||||||||||| |||| || Sbjct 73380 GGAATTTCCGGTGGAGCGGTGAAATGCATAGAGATCGGAAAGAACACCAATGACGAAAGC 73321 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | ||||| | ||||| || || | |||||||| |||||||||| ||||||| Sbjct 73320 ACTATGCTGGGCTGACACTAACACTGAGAGACGAAAGCTAGGGGAGCAAATGAGATTAGA 73261 Query 310 TACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||| ||||| | ||| |||||||| Sbjct 73260 TACCCTAGTAGTTCTAGCCGTAAACGAT 73233 >seq13183 Length=776958 Score = 102 bits (112), Expect = 2e-19 Identities = 126/171 (74%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 167 ACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGT 226 ||| ||||| | |||||| | ||| |||| | |||||| ||||||| ||||| | Sbjct 54790 ACTTGAGTGAGACAGAGGAGAGTGAAATTTTATGTGTAGG-GTGAAATCTATAGATCTAC 54732 Query 227 GGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAG 286 ||||||| |||| |||||||||| | || || ||| ||||| | ||||| Sbjct 54731 GGAGGAATGCCAAAAGCGAAGGCAGTTCTCTAGGTCCCTACTAACGCTGGGGTGTGAAAG 54672 Query 287 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||| |||||||| |||||||||||||||||||||| ||| | || ||| Sbjct 54671 TATGGGAAGCAAACAAGATTAGATACCCTGGTAGTCCATGCCGTTAATGAT 54621 >seq52528 Length=502522 Score = 96.9 bits (106), Expect = 9e-18 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 200 GTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGG 259 |||||| ||||||| ||||||| | | |||||| |||| | |||||||| | || | Sbjct 476185 GTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGTAAAGGCAGCTCTCTAG 476244 Query 260 GATAAC-ACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGT 318 || | || |||||| | ||||||| |||||||| ||||||||||||||||| | | Sbjct 476245 -ATCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCCGAT 476303 Query 319 AGTCCACGCCCTAAA 333 |||||| ||| |||| Sbjct 476304 AGTCCATGCCGTAAA 476318 >seq25665 Length=96300 Score = 75.2 bits (82), Expect = 3e-11 Identities = 119/171 (70%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 167 ACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGT 226 ||| ||||| | ||||||| |||||||| | ||| ||||||| |||||| | | Sbjct 78909 ACTTGAGTGAGATAGAGGGGAGTGGAATTTTGTGACTAGGGGTGAAATCTGTAGATCTAT 78968 Query 227 GGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAG 286 | ||||| | || | |||| ||| | |||| | ||| ||| | ||||| Sbjct 78969 GAAGGAATGCTAAATGAGAAGATAGCTCTTTGGGTCCCTATTGATGCTGGGGTGAGAAAG 79028 Query 287 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 | ||| | ||| ||||||||||||| |||||||||| ||| |||| ||| Sbjct 79029 CAAGGGAAAAAAATAGGATTAGATACCGTGGTAGTCCATGCCATAAATGAT 79079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1288659855808