Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq72902 141 1e-31 seq39223 131 2e-28 seq38835 113 6e-23 seq43093 96.9 5e-18 seq25504 95.1 2e-17 seq44476 91.5 2e-16 seq27481 73.4 5e-11 >seq72902 Length=152221 Score = 141 bits (156), Expect = 1e-31 Identities = 176/243 (72%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 108374 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 108316 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 108315 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCC-------------- 108270 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 108269 ---TTTTTGAGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 108215 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 108214 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 108155 Query 246 GTA 248 ||| Sbjct 108154 GTA 108152 Score = 141 bits (156), Expect = 1e-31 Identities = 176/243 (72%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 128957 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 129015 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 129016 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCC-------------- 129061 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 129062 ---TTTTTGAGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 129116 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 129117 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 129176 Query 246 GTA 248 ||| Sbjct 129177 GTA 129179 >seq39223 Length=125225 Score = 131 bits (144), Expect = 2e-28 Identities = 170/237 (72%), Gaps = 20/237 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 7378 CCTTCCAGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 7436 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| ||||||| |||| || || || ||||| || Sbjct 7437 TGTGTTTTTGGTAAACAATCGCCCGGGCCTGGTCACTACGACCCCC-------------- 7482 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || || || ||||||||||||||||||||||||||| |||||| ||| ||||| Sbjct 7483 ---TTTTTGAGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGTCGAGTTCCT 7537 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 || | |||| | || | ||| ||||||||||||| |||||||||||||||| Sbjct 7538 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTT 7594 >seq38835 Length=1124991 Score = 113 bits (124), Expect = 6e-23 Identities = 173/247 (70%), Gaps = 21/247 (9%) Strand=Plus/Minus Query 3 TATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGG 62 || ||||||| || ||||||||||||| || |||||| | ||||| | ||| | | Sbjct 317413 TAACCTTCCAGTACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGTGGAG 317355 Query 63 ACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAAC 122 |||| ||||||||||||||| | ||| |||||| |||| ||| || Sbjct 317354 ACCTATGTTTTTAGTAAACAATTGCTCGGGCCTATTCACTGCTACCCCC----------- 317306 Query 123 ACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATT 182 || ||| || |||||||||||||| ||||||||| || |||||| ||| || Sbjct 317305 ------TTTTTCAGGAG--GCACCCCTTCTCCCAAAGTTACGGTGCTATTTTGACGATTT 317254 Query 183 CCTTAACCACAGTTCAC-CCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| | |||| | | | ||| ||||||||||||||| ||||||||| ||| Sbjct 317253 CCTTAGAGAGAGTTGTCTCTTTTCCCCTAAGTATTCTCTACCTGCCCACCTGTGATAGTT 317194 Query 242 TACGGTA 248 | |||| Sbjct 317193 TCGGGTA 317187 Score = 95.1 bits (104), Expect = 2e-17 Identities = 166/242 (69%), Gaps = 21/242 (9%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||| |||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 394491 CCTTCCAGCACTGGGCAGGCGTCATCCCCAATACATGGTCTTAC-GACTTTGCGGAGACC 394433 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| | ||||| || | || || ||| ||||||| Sbjct 394432 TGTGTTTTTGGCAAACAATCACCCGGGCCTGGTCACTGTGACCACC-------------- 394387 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 ||| || || |||||||||||||| ||||||||||| |||||| | | || || Sbjct 394386 ---TTCTTGAGGAG--GCACCCCTTCTCCCAAAGTTACGGGGTTATTTTGTCAAGTTGCT 394332 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| |||||||||| || ||| | |||||| |||| || Sbjct 394331 TAGAGAGAGTTGTCACGTGCCCCTAGGTATTCTCTATCTAACCCCATGTGTCAGTTT-CG 394273 Query 246 GT 247 || Sbjct 394272 GT 394271 >seq43093 Length=8020 Score = 96.9 bits (106), Expect = 5e-18 Identities = 166/243 (68%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||| |||| |||||||| || |||||| | ||||| | ||| | |||| Sbjct 1801 CCTTCCAGCACTGGGCTGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGTGGAGACC 1859 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| ||||||| | || || || || | ||| || Sbjct 1860 TGTGTTTTTGGTAAACAATTGCCCGGGCCTGGTCACTTCAACCCCC-------------- 1905 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || || || ||||| |||||||||||||||||||| |||||| ||| ||||| Sbjct 1906 ---TTTTTGAGGAGA--CACCCATTCTCCCGAAGTTACGGGGCTATTTTGTCGAGTTCCT 1960 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || || ||| ||||| ||||||| ||||||||||| || | | Sbjct 1961 TAGAGAGAGTTGTCTCGCACCCCTAGGTATTATCTACCTACCCACCTGTGTCAGTATCGG 2020 Query 246 GTA 248 ||| Sbjct 2021 GTA 2023 >seq25504 Length=639989 Score = 95.1 bits (104), Expect = 2e-17 Identities = 88/109 (81%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||| |||| ||||||||| |||||||||| ||||||| | |||| | Sbjct 68225 GGCACCCCTTCTCTCGAA-TTACGGGGCTATTTTGCCGAGTTCCTTAGATAGAGTTGTCT 68167 Query 201 CGAACGCCTTAGTATT-CTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||| |||||||| |||||||||||||||| |||| Sbjct 68166 CGCGCCCCTAGGTATTTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 68118 >seq44476 Length=545 Score = 91.5 bits (100), Expect = 2e-16 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||| ||||||||||||||| |||| |||||| ||| ||||||| | |||| Sbjct 3 GGCACCCATTCTCCCGAAGTTACAGGGCTATTTTGTCGAGTTCCTTAGAGAGAGTTGTAT 62 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 || || ||| ||||| ||||||| |||||||||||||| Sbjct 63 CGCACCCCTAGGTATTATCTACCTACCCACCTGTGTCGGT 102 >seq27481 Length=63815 Score = 73.4 bits (80), Expect = 5e-11 Identities = 73/92 (79%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 158 AGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAA-CGCCTTAGTATT 216 ||||||||| | |||||||||| |||||| | || ||| | ||| |||| |||||| Sbjct 47181 AGTTACGGGTC-ATTTTGCCGAGTTCCTTCAACATGGTTTTCTCGACGCGCCCTAGTATA 47123 Query 217 CTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 |||||| || ||||||||||||||| |||| Sbjct 47122 CTCTACTTGTTCACCTGTGTCGGTTTGGGGTA 47091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693909588246