Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq72902 269 7e-70 seq39223 224 2e-56 seq43093 197 3e-48 seq38835 176 1e-41 seq54045 107 5e-21 >seq72902 Length=152221 Score = 269 bits (298), Expect = 7e-70 Identities = 308/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 108564 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 108505 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 108504 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 108445 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 108444 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 108385 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 108384 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 108325 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| | | Sbjct 108324 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTT--- 108268 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 || ||| ||| | ||||||||||||||||||| || || Sbjct 108267 TTTGAGGA--------------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 108228 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 108227 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 108170 Score = 269 bits (298), Expect = 7e-70 Identities = 308/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 128767 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 128826 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 128827 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 128886 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 128887 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 128946 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 128947 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 129006 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| | | Sbjct 129007 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTT--- 129063 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 || ||| ||| | ||||||||||||||||||| || || Sbjct 129064 TTTGAGGA--------------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 129103 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 129104 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 129161 >seq39223 Length=125225 Score = 224 bits (248), Expect = 2e-56 Identities = 298/418 (71%), Gaps = 27/418 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || | |||| ||| || ||| |||| || ||| |||||| Sbjct 7188 GCATCTTCACAGACATGTTTATTTTACTAAGCCTCTCTCCGAGATAGTGCCCATATCGTT 7247 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 7248 ACACCTTTCGTGCAGGTTGGAACTTACCCGACAAGCAATTTCGCTACCTTAGGACCGTTA 7307 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | |||| |||| ||||| |||| ||||||| || | ||| | | | || | ||| Sbjct 7308 TAGTTATGGCCACCGTTCACCGAGGCTTCGGTCGTGGGCTCCCCTATCATCAGGTCACCA 7367 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || ||||||| |||| |||||||||||| ||| |||| | ||| || ||| Sbjct 7368 ACTTCCTTGACCTTCCAGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 7427 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| |||||| |||| |||||||| || ||||| | | Sbjct 7428 GCGGAGACCTGTGTTTTTGGTAAACAATCGCCCGGGCCTGGTCACTACGACCCCCTT--- 7484 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 || ||| ||| | ||||||||||||||||||| || || Sbjct 7485 TTTGAGGA--------------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 7524 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||| | |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 7525 TTGTCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 7582 >seq43093 Length=8020 Score = 197 bits (218), Expect = 3e-48 Identities = 293/418 (70%), Gaps = 27/418 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||||| | || | ||||||| || ||| ||||||| ||| |||| | Sbjct 1611 GCATCTTCAATGACATGTTTATTTCACCGAACCTCTCTCCGAGACAGTGCCCATATCGGT 1670 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1671 ACGCCTTTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1730 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | |||| |||| || || || |||||| ||||| | ||| | | | || | ||| Sbjct 1731 TAGTTATGGCCACCATTCACAGGGGCTCCGATCGTGGGCTCCCCTGTCATCAGGTCACCA 1790 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || ||||||| |||| |||| ||||||| ||| |||| | ||| || ||| Sbjct 1791 ACTTCCTTCACCTTCCAGCACTGGGCTGGCGTCAGCCCCCATACATGGTCTTACGACTTT 1850 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 | ||| |||||||||| |||||| | || |||||||| |||| ||| | | Sbjct 1851 GTGGAGACCTGTGTTTTTGGTAAACAATTGCCCGGGCCTGGTCACTTCAACCCCCTT--- 1907 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 || |||| |||| | ||||||||||||||||| || || Sbjct 1908 TTTGAGGAG--------ACACC------------CATTCTCCCGAAGTTACGGGGCTATT 1947 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||| | |||||||| ||||| |||| | ||| |||||| |||||| | |||| Sbjct 1948 TTGTCGAGTTCCTTAGAGAGAGTTGTCTCGCACCCCTAGGTATTATCTACCTACCCAC 2005 >seq38835 Length=1124991 Score = 176 bits (194), Expect = 1e-41 Identities = 286/416 (69%), Gaps = 27/416 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||||| || || || ||||||| ||| ||| ||||||| ||| ||| || Sbjct 394681 GCATCTTCATAGACATGTCTATTTCACCGAGCCTCTCTCTGAGACAGTGCCTAGATCATT 394622 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||| ||||||| || ||||||||||| |||||||||||| | || Sbjct 394621 ACGCCTTTCGTGCGGGTCAGAACTTATCCAACAAGGAATTTTGCTACCTTAGGAATGCTA 394562 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT----AGCTAACCC 188 | |||| |||| || || ||| |||||||| || | ||||| | | || | ||| Sbjct 394561 TAGTTATGGCCACCATTCACCAGGGCTTCGGTCGCGGGCTTCCCTATCACCAGGTCACCA 394502 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || ||||||| |||| |||||||||||| ||| |||| | ||| || ||| Sbjct 394501 ACTTCCTTGACCTTCCAGCACTGGGCAGGCGTCATCCCCAATACATGGTCTTACGACTTT 394442 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||| || | |||||||| || |||| | | Sbjct 394441 GCGGAGACCTGTGTTTTTGGCAAACAATCACCCGGGCCTGGTCACTGTGACCACCTT--- 394385 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| ||| | ||||||||| ||||||||| | || Sbjct 394384 CTTGAGGA--------------------GGCACCCCTTCTCCCAAAGTTACGGGGTTATT 394345 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACC 424 ||| | |||| ||| ||||| || | || ||| ||||||||||| | |||| Sbjct 394344 TTGTCAAGTTGCTTAGAGAGAGTTGTCACGTGCCCCTAGGTATTCTCTATCTAACC 394289 Score = 132 bits (146), Expect = 1e-28 Identities = 197/279 (71%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 || ||||||||| || || ||||||| ||| ||| ||||||| || || || Sbjct 317600 GCTTCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCTGAGACAGTGCACAGTTCATT 317541 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 | ||| |||||| ||| ||||||||||| ||||||||||| ||||| ||||| |||| Sbjct 317540 AGGCCTTTCGTGTGGGTTGGAACTTACCCAACAAGGAATTTTTCTACCATAGGAAAGTTA 317481 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | |||| || |||||| | |||||||||| || ||| | | | || | ||| Sbjct 317480 TAGTTATGGTTGCCGTTCATCGGGGCTTCGGTCGCCGGCTCCCCTATCATCAGGTTACCA 317421 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | ||||||||| | || |||||||||||| ||| |||| | ||| || ||| Sbjct 317420 ACTTCCCTAACCTTCCAGTACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 317361 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCT 287 | ||| || |||||||| |||||| | || ||||| Sbjct 317360 GTGGAGACCTATGTTTTTAGTAAACAATTGCTCGGGCCT 317322 >seq54045 Length=1909273 Score = 107 bits (118), Expect = 5e-21 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 || |||| ||||||||||||| || | ||||||| || ||| ||| || | Sbjct 372828 GCAGATAATCTGCATCTTCACAAACATATATATTTCACCAAGCCTCTCTCTGAGGCAATG 372769 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121 || ||||||| || |||||||||||||||||| | | ||||| ||||||||||||| Sbjct 372768 CCCAGATCGTTATACCTTTCGTGCAGGTCGGAACTAAACTAACAAGAAATTTCGCTACCT 372709 Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTT 160 ||| | |||||| ||||| ||| |||| ||| | |||| Sbjct 372708 TAGTATCGTTATAGTTACAACCGTCGTTCACCAGTGCTT 372670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1259880851584