Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq72902 217 3e-54 seq13264 161 2e-37 seq43093 159 8e-37 seq13668 158 3e-36 seq39223 150 4e-34 seq31449 138 3e-30 seq38835 127 5e-27 seq54771 109 1e-21 >seq72902 Length=152221 Score = 217 bits (240), Expect = 3e-54 Identities = 300/409 (73%), Gaps = 18/409 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 107911 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 107852 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 107851 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 107792 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || ||||| || | | ||| ||||| || || | | Sbjct 107791 ACATTCTCGCTTCCGCTTCG--TCCAC-ACCTGCTTGCGCGGGTGCTTC-CCTCTAAGGC 107736 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 107735 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 107680 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 107679 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 107621 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 107620 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 107561 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 107560 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 107512 Score = 217 bits (240), Expect = 3e-54 Identities = 300/409 (73%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 129420 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 129479 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 129480 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 129539 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || ||||| || | | ||| ||||| || || | | Sbjct 129540 ACATTCTCGCTTCCGCTTCG--TCCAC-ACCTGCTTGCGCGGGTGCTTC-CCTCTAAGGC 129595 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 129596 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 129651 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 129652 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 129710 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 129711 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 129770 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 129771 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 129819 >seq13264 Length=684448 Score = 161 bits (178), Expect = 2e-37 Identities = 155/195 (79%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGA-ATCACTTGACC 265 ||||||||||||| ||| ||||| |||||| | ||| ||||||| | | | || || Sbjct 392726 CCACAGCTTCGGCAGATCACTTA-GCCCCGTT-CATCTTCGGCGCAAAGAGCGCTCGATA 392783 Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 |||||||||||| |||||||||||||| |||||||||| | | |||||||||||||||| Sbjct 392784 AGTGAGCTATTATGCACTCTTTCAAGGGTGGCTGCTTCTAGGAAAACCTCCTGGTTGTCT 392843 Query 326 ACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGG 385 | | | | || |||||| ||||||| || |||||||||||||||| ||||| || Sbjct 392844 CTGTACCCCTACCTCCTTTATCACTGAGCAGTCATTTAGGGGCCTTAGCTGGTGATCCGG 392903 Query 386 GCTGTTTCCCTCTCG 400 ||| |||| ||||| Sbjct 392904 ACTGATTCCTTCTCG 392918 >seq43093 Length=8020 Score = 159 bits (176), Expect = 8e-37 Identities = 152/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 209 ACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGT 268 ||||||||||| ||| |||| |||||| | ||| |||| || | | || || |||| Sbjct 3657 ACAGCTTCGGCCGATCGCTTA-GCCCCGTT-CATCTTCGGTGCAAGAGCGCTCGATCAGT 3714 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 ||||||||| |||||||| ||||| |||||||||| | || |||||||||| ||||| | Sbjct 3715 GAGCTATTATGCACTCTTCCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTG 3774 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 || | | || |||||| ||| || || |||||||||||||||| ||||| ||||| Sbjct 3775 CACCCCTACCTCCTTTATCACAGAACGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCT 3834 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 3835 GTTTCCCTCTCG 3846 Score = 150 bits (166), Expect = 4e-34 Identities = 150/192 (78%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 209 ACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGT 268 ||||||||||| ||| |||| |||||| | ||| | || | | | || || ||| Sbjct 2473 ACAGCTTCGGCAGATCGCTTA-GCCCCGTT-CATCTTTGGTGTAAGAGCGCTCGATTAGT 2530 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 ||||||||| |||||||| ||||| |||||||||| | || |||||||||| ||||| | Sbjct 2531 GAGCTATTATGCACTCTTCCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTG 2590 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 || | | || |||||| ||| ||| || |||||||||||||||| ||||| ||||| Sbjct 2591 CACCCCTACCTCCTTTATCACAGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCT 2650 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 2651 GTTTCCCTCTCG 2662 >seq13668 Length=1630 Score = 158 bits (174), Expect = 3e-36 Identities = 153/194 (79%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| ||| |||| ||||| | ||| | ||||| | | || || || Sbjct 1624 CCACAGCTTCGGCAGATCGCTTA-GCCCCATT-CATCTTTGGCGCAAGAGCGCTCGATCA 1567 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||||||||||||||||| |||| |||||||||| | || |||||||||| ||||| Sbjct 1566 GTGAGCTATTACGCACTCTTTGAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTC 1507 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | || |||||| |||| || || ||||||||||||| || ||||| ||| Sbjct 1506 TGCACCCCTACCTCCTTTATCACTTAGCGGTCATTTAGGGGCCTTAGATGGTGATCCGGG 1447 Query 387 CTGTTTCCCTCTCG 400 || ||||||||||| Sbjct 1446 CTATTTCCCTCTCG 1433 >seq39223 Length=125225 Score = 150 bits (166), Expect = 4e-34 Identities = 150/192 (78%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 209 ACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGT 268 ||||||||||| ||| |||| |||||| | ||| |||| | | | || || |||| Sbjct 8051 ACAGCTTCGGCAGATCGCTTA-GCCCCGTT-CATCTTCGGTGTAAGAGCGCTCGATCAGT 8108 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 ||||||||| ||||||||| |||| |||||||||| | | |||||||||| ||||| | Sbjct 8109 GAGCTATTATGCACTCTTTTAAGGGTGGCTGCTTCTAGGAAAACCTCCTGGCTGTCTCTG 8168 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 || | | || |||||| ||| ||| | |||||||||||||||| ||||| ||||| Sbjct 8169 CACCCCTACCTCCTTTATCACAGAGCGGTTATTTAGGGGCCTTAGCTGGTGATCCGGGCT 8228 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 8229 GTTTCCCTCTCG 8240 >seq31449 Length=68655 Score = 138 bits (152), Expect = 3e-30 Identities = 146/191 (76%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | ||||| || || ||| || ||| ||| Sbjct 1694 GCTTCGGTGAATCACTTGAGCCCTGAGACATTTTCAATGCCATGGAG---CTAGACTAGT 1750 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| | Sbjct 1751 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCTACCTCCTGGTTGTCATGG 1810 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||| | Sbjct 1811 CTTGATCACTTCCTTTTCCACTAAGTAATTGCTTAGGGACCTTAGCGTACGATCTGGGTT 1870 Query 389 GTTTCCCTCTC 399 ||||||||||| Sbjct 1871 GTTTCCCTCTC 1881 >seq38835 Length=1124991 Score = 127 bits (140), Expect = 5e-27 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 |||||||||||||| |||||||||||| ||||| |||| | | |||||||||| | ||| Sbjct 316642 AGTGAGCTATTACGGACTCTTTCAAGGGTGGCTTCTTCTAGGAAAACCTCCTGGCTATCT 316583 Query 326 ACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGG 385 ||| | | || |||||| |||||||| || ||||||||||||||| ||||||| Sbjct 316582 CTGCACCCCTACCTCCTTTATCACTGAGTGGTCATTTAGGGGCCTTAGCTAGTGATCTGA 316523 Query 386 GCTGTTTCCCTCTCG 400 ||| |||||| |||| Sbjct 316522 GCTATTTCCCGCTCG 316508 Score = 127 bits (140), Expect = 5e-27 Identities = 146/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||| ||||||||| ||| ||| |||||| | ||| | | | | |||| || || Sbjct 393836 CCATAGCTTCGGCAGATCGATTA-GCCCCGTT-CATCTTTGACATATATGCACTCGATCA 393779 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||||||||||||||| ||||| |||| | || || || ||||||||| Sbjct 393778 GTGAGCTATTACGCACTCTTTCAAGGGTGGCTACTTCTAGGCATACATCTTGGTTGTCTC 393719 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | || ||||| | ||||| | || |||||||||||| || ||||| || Sbjct 393718 TGCACCCCTACCACCTTTATCTCTGAGCGATCATTTAGGGGCCTTAATTGGTGATCCAGG 393659 Query 387 CTGTTTCCCTCTCG 400 ||||||||||||| Sbjct 393658 TTGTTTCCCTCTCG 393645 >seq54771 Length=418350 Score = 109 bits (120), Expect = 1e-21 Identities = 139/190 (73%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 213 CTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGTG 269 ||| || | || ||||||||| | ||| || | || || ||| || ||| |||| Sbjct 305159 CTTAGGTGAATCACTTAAGCCATGATACTTTTTTGGTGCCATGGAG---CTGGACTAGTG 305215 Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGC 329 |||||||| |||| |||||||||| |||||||||| ||||| ||||| || ||| Sbjct 305216 AGCTATTATATTTTCTTCAAAGGATGGCTTCTTCCAAGCCTACCTCTTGGTTATCATCGC 305275 Query 330 AACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTG 389 ||| |||||| ||||| ||| | ||||| | ||||||| ||||||| || || Sbjct 305276 TCAATCACTTCCTTTTCCACTAAGTAATTGCTTAGAGACCTTAGCAAATGATCTAGGTTG 305335 Query 390 TTTCCCTCTC 399 |||||||||| Sbjct 305336 TTTCCCTCTC 305345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176741506048