Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq72902 264 2e-68 seq19853 219 7e-55 seq38351 174 2e-41 seq38835 170 3e-40 seq64863 165 1e-38 seq56707 123 4e-26 seq56783 113 7e-23 seq23028 96.9 5e-18 seq27224 87.8 3e-15 seq54771 86.0 1e-14 >seq72902 Length=152221 Score = 264 bits (292), Expect = 2e-68 Identities = 223/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 109304 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 109245 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 109244 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 109185 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||| | |||||| ||||||||||||||| || Sbjct 109184 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCGCACCGGATATGGACCGAACTGTCTCACG 109125 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 109124 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 109065 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 109064 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 109032 Score = 264 bits (292), Expect = 2e-68 Identities = 223/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 128027 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 128086 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 128087 TTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 128146 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||| | |||||| ||||||||||||||| || Sbjct 128147 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCGCACCGGATATGGACCGAACTGTCTCACG 128206 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 128207 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 128266 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 128267 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 128299 >seq19853 Length=673 Score = 219 bits (242), Expect = 7e-55 Identities = 213/273 (78%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| ||||| ||| |||| ||| |||| | Sbjct 392 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCTGCTCCGCACTTGGCTACCCATCG 451 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | | || | ||||||| ||||||||| |||| |||||||||||||||||| Sbjct 452 TTTACCGTAGACACGATAACTGGTACACCAGAGGAGCGTCCTTCCCGGTCCTCTCGTACT 511 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||| ||||| || | |||||| |||||| ||||| ||||||||| | Sbjct 512 AGGGAAAGGTCCACTCAAGGCTCTAATGCCCACACCGGATATGGACCAAACTGTCTCATG 571 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 || ||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 572 ACATTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 631 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||||||||| | || ||| |||||||| Sbjct 632 ACTATAGCCCCAGGTGGCGAAGAGACGACATCG 664 >seq38351 Length=2350310 Score = 174 bits (192), Expect = 2e-41 Identities = 184/241 (76%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || |||||| ||||||||| |||||| ||||| ||| |||| ||| |||||| Sbjct 2092240 GGTGGGCTTTCTACTTAGATGCTTTCAGCAGTTATCTGCTCCGCACTTGGCTACCCAGCG 2092181 Query 64 ATGCACTTG-GCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | ||| | ||||||| |||||||||| |||| |||||||||||||||| | Sbjct 2092180 TTTATCGTATGCAAGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTATT 2092121 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || | || | | |||||| ||||| |||||| || || Sbjct 2092120 AGGGAAAGGTCCTCTCAATGCTCTAATGCTCGCACCGGATATGGACCAAACTGTTTCACG 2092061 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 ||||| ||||||||| || ||| || ||||||||||||||| |||||||||||| || | Sbjct 2092060 ACGTTTTGAACCCAGTTCACGTACCGTTTTAATGGGCGAACAACCCAACCCTTGGAACAT 2092001 Query 243 A 243 | Sbjct 2092000 A 2092000 >seq38835 Length=1124991 Score = 170 bits (188), Expect = 3e-40 Identities = 204/273 (75%), Gaps = 3/273 (1%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||| ||||| | ||| |||||| ||| ||||| ||| ||||| Sbjct 395416 GGTGGGCTTACTACTTTGATGCTTCCAGTAGTTATCCGCTCCGAACTTGGCTACCCAGTG 395357 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||||| ||||| || || |||||||| ||||||||| Sbjct 395356 TTTACTGTAGGCATGATAACTGGTGC-CCAGATGTGCATCATTCCCGGTCATCTCGTACT 395298 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || | ||||||| || ||||| | ||||| ||||| ||||||||| || Sbjct 395297 AGGGAAAGGTGCTCTCAATGCTCTAACGCCTGCACTGGATATGGACCAAACTGTCTCACG 395238 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 | ||| ||||||| ||| | | || |||||||||| |||||||||||||||||| || | Sbjct 395237 ATATTCCGAACCCAACTCACCTACCGCTTTAATGGG-GAACAGCCCAACCCTTGGAACAT 395179 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||| |||| | | || |||||||||||| Sbjct 395178 ACTACAGTCCCAAGTGGCGAAGAGCCGACATCG 395146 >seq64863 Length=79812 Score = 165 bits (182), Expect = 1e-38 Identities = 154/196 (79%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 80 AACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCA 139 ||||||| ||| |||||| ||||| |||| ||||||| |||||| ||| | |||||||| Sbjct 4526 AACTGGTACACAAGAGGTGTGTCCTTCCCAGTCCTCTTGTACTAGGGAAAAATCCTCTCA 4585 Query 140 AATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCT 199 | || || || | || ||| ||| |||||| |||| || ||||||||||||||| Sbjct 4586 ATGCTCTAACACCAGCACCGAATATGGATCGAACTATCTCATGATGTTCTGAACCCAGCT 4645 Query 200 CGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATG 259 | | | || |||||||||| ||||| |||||||||||| || |||| ||||| |||| | Sbjct 4646 CACATACCGCTTTAATGGGAGAACAACCCAACCCTTGGAACATACTACAGCCTCAGGTGG 4705 Query 260 AGACGAGCCGACATCG 275 || ||| |||||||| Sbjct 4706 CGAAGAGTCGACATCG 4721 >seq56707 Length=227814 Score = 123 bits (136), Expect = 4e-26 Identities = 106/131 (81%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 149 CGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCT 208 ||||| | |||||| |||||||| |||||| | ||||||||||||||||| ||| || Sbjct 29851 CGCCCGCATCGGATATGGACCGAAGTGTCTCACACCGTTCTGAACCCAGCTCACGTACCG 29910 Query 209 CTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGG----ATGAGACG 264 |||| ||||||||||| || ||||||||| || |||| |||||||||| | || | Sbjct 29911 CTTTCATGGGCGAACAACCTAACCCTTGGAACATACTACAGCCCCAGGTGGCAAATGAAG 29970 Query 265 AGCCGACATCG 275 ||||||||||| Sbjct 29971 AGCCGACATCG 29981 >seq56783 Length=543973 Score = 113 bits (124), Expect = 7e-23 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 184 CGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTA 243 ||||||||||||||| | ||| ||||||||||||||||||| |||||||||||| || || Sbjct 331719 CGTTCTGAACCCAGCACACGTACCTCTTTAATGGGCGAACATCCCAACCCTTGGAACATA 331778 Query 244 CTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||||||||| | | |||||||||||| Sbjct 331779 CTACAGCCCCAGGTGGCAAAGAGCCGACATCG 331810 >seq23028 Length=800061 Score = 96.9 bits (106), Expect = 5e-18 Identities = 102/133 (77%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 416743 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 416684 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | ||| | |||| || |||||||||| |||| |||||||||||||||||| Sbjct 416683 TTTACCGTAAGCACGATAACTTGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 416624 Query 123 AAGGACAGCTCCT 135 | ||| ||||||| Sbjct 416623 AGGGAAAGCTCCT 416611 >seq27224 Length=367450 Score = 87.8 bits (96), Expect = 3e-15 Identities = 85/109 (78%), Gaps = 4/109 (4%) Strand=Plus/Minus Query 171 AACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAA 230 ||||||||| |||||| |||||||||||| ||| || |||| |||||| |||||| ||| Sbjct 60493 AACTGTCTCAAGACGTTTTGAACCCAGCTCACGTACCGCTTTCATGGGCAAACAGCTCAA 60434 Query 231 CCCTTGGGACCTACTTCAGCCCCAGGATG----AGACGAGCCGACATCG 275 ||||| | || |||| ||| ||| | | || |||||||||||| Sbjct 60433 CCCTTAGAACATACTATAGCTCCAAGTGGCGAAGGAAGAGCCGACATCG 60385 >seq54771 Length=418350 Score = 86.0 bits (94), Expect = 1e-14 Identities = 169/250 (68%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 30 AGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCA 89 |||| || | || | | ||||| ||| ||| || | || ||| |||| |||| || Sbjct 303172 AGCTGTTCTTCCATACCAACTTTGCTACCCGGCGCTATTATTAGCATAACAATTGGTACA 303231 Query 90 CCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT-- 147 ||| || || ||| | |||||||| |||||| || |||||| | || ||| Sbjct 303232 CCATAGATTGACCCAGCTTAGTCCTCTCATACTAAAGATGGCTCCTAATAGATCTCCCTT 303291 Query 148 --ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTG 205 || || | | |||||| || ||||| ||| ||| |||| |||||| ||| || Sbjct 303292 TCACACCAATGGTAGATAGGAACAAAACTGCCTCATGACATTCTAAACCCAACTCATGTT 303351 Query 206 CCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGA 265 | |||| || | ||||| |||||||||||||| ||| | || |||||| | || Sbjct 303352 CAACTTTTATTGATGAACAATTGAACCCTTGGGACCTTCTTTAACCTTAGGATGTGTTGA 303411 Query 266 GCCGACATCG 275 | | |||||| Sbjct 303412 GTCAACATCG 303421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780248569272