Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq72902 271 2e-70 seq40833 197 3e-48 seq11244 140 8e-31 seq54947 132 1e-28 seq13183 131 4e-28 seq177 118 3e-24 >seq72902 Length=152221 Score = 271 bits (300), Expect = 2e-70 Identities = 307/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 103039 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 102980 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 102979 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 102920 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| ||||| |||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 102919 GGCTGATCATCTTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 102860 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| || | || ||| ||| |||| Sbjct 102859 ACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 102811 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||||| ||| | ||||||| |||| Sbjct 102810 TCCTCAGCC--TACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCA 102753 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 102752 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 102707 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 102706 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 102660 Score = 271 bits (300), Expect = 2e-70 Identities = 307/410 (75%), Gaps = 30/410 (7%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 134292 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 134351 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 134352 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 134411 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| ||||| |||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 134412 GGCTGATCATCTTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 134471 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| || | || ||| ||| |||| Sbjct 134472 ACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 134520 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||||| ||| | ||||||| |||| Sbjct 134521 TCCTCAGCC--TACGGGGTATTAGCAACCGTTTCCAGTTGTTGTTCCCCTCCCAAGGGCA 134578 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 134579 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 134624 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 134625 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 134671 >seq40833 Length=287482 Score = 197 bits (218), Expect = 3e-48 Identities = 290/404 (72%), Gaps = 31/404 (8%) Strand=Plus/Minus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| |||||||| | | |||||||||| ||| |||||||||| ||||||||| | || Sbjct 25372 ACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCATCAGGCTTTCGCCCATTGCGGAA 25313 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||| ||||||||||||| ||||||| ||| ||||||| || |||||||||||||| Sbjct 25312 AATTCCCTACTGCTGCCTCCCATAGGAGTTTGGGTCGTGTCTAAG-TCCAGTGTGGCTGG 25254 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 ||||| |||| ||| ||||| |||| || ||| ||| || ||| || | ||||||||| Sbjct 25253 TCATCTTCTCGGACAAGCTACTGATCATCTCCTTGGTAAGCTATTGCCTCACCAACTAGC 25194 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | |||| | | || | || ||| ||| |||| || | Sbjct 25193 TAATCAGACGCG-----ATCCCCTCCT---CGGGCAGA--TTCCTCCT-TTTGTTCCT-- 25147 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | || | ||||||| | ||| |||||| | ||| | ||||||| ||||| ||| Sbjct 25146 CAGCATACGGGGTATTATCAACCATTTCCAATTGTTGTTCCCCTCCCAAGGGCAGGTTCT 25087 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | |||||||||||||| || | ||| || ||| |||| || Sbjct 25086 TACGCGTTACTCACCCGTCCACCTTT------GGAAACA-CAA----CTTC------CCA 25044 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||| || |||| ||||| |||| ||||| Sbjct 25043 TCCGACTTGCATGTGTTAAGCATGCCTCCAGCATTCATCCTGAG 25000 >seq11244 Length=389271 Score = 140 bits (154), Expect = 8e-31 Identities = 115/140 (82%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 73519 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 73578 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | || ||| |||||||||||||||||||||||||||| |||||||||||| ||| | | Sbjct 73579 GCAGAAAATTGCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATAT 73638 Query 125 GGCTGGTCATCCTCTCAGAC 144 | || ||||| |||| ||| Sbjct 73639 GACTAATCATCTTCTCGGAC 73658 >seq54947 Length=327996 Score = 132 bits (146), Expect = 1e-28 Identities = 123/156 (79%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 12 CCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAAT 71 |||| |||| ||| | | ||| | |||| ||| | |||||||| |||||| | | || Sbjct 277109 CCCGTGGGCCGTCTACCTCCACACAGCATTGCTCCGTCAGGCTTTTGCCCATCGCGGAAA 277168 Query 72 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGT 131 ||||||||||||| |||||| || |||||||| |||||||||||| ||||||||| || | Sbjct 277169 ATTCCCCACTGCTTCCTCCCATATGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGTTGAT 277228 Query 132 CATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 ||||| |||||||||| |||| |||| || || Sbjct 277229 CATCCGAAAAGACCAGCTATTGATCATCGCTTAAGT 277264 >seq13183 Length=776958 Score = 131 bits (144), Expect = 4e-28 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||||| || || || |||| || || | | ||||||||| ||| |||||||| Sbjct 55001 CCTTCTTCACTCATGCAATATTGCTGGATTAGACGTTTGCCCATTGTCCAAGATTCCCCA 55060 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 ||||| || || || |||||| || | |||| |||||||||||||||||| ||||| Sbjct 55061 CTGCTACCCCCTGTGGGAGTCCGGGCTGTGTATCAGTTCCAGTGTGGCTGATCATCTAAA 55120 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCAT 199 |||||||||| | ||| | | || ||| || ||||| ||||||| ||||| | || Sbjct 55121 AAGACCAGCTAAGCATCATTGGCTTGGTCAACCTTTACCTAACCAACTACCTAATACTAT 55180 Query 200 CTGGGTTCATCCGATAG 216 | || ||||| |||| Sbjct 55181 GTAGGCTCATCAAATAG 55197 >seq177 Length=930575 Score = 118 bits (130), Expect = 3e-24 Identities = 204/293 (70%), Gaps = 30/293 (10%) Strand=Plus/Minus Query 107 GTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGG 166 |||||||||| |||||||||||| ||||| ||| ||||||||| |||| |||||| || Sbjct 106858 GTGTCTCAGTCCCAGTGTGGCTGATCATCTGCTCGGACCAGCTACTGATCATCGCCTTGG 106799 Query 167 TGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCC 226 | || ||| || | |||||||||||||| | | | | ||| || | Sbjct 106798 TAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCC--------TCGGGCT 106747 Query 227 GAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTT 286 || ||| ||| |||| || | | || || | ||||||||| |||||||||||| ||| Sbjct 106746 GA--TTCCTCCT-TTTGCTCCT-CAAC-CTACGGGGTATTAGCAACCGTTTCCAGTTGTT 106692 Query 287 ATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAA 346 | ||||||| ||||| ||| | |||||||||||||||||||| ||| Sbjct 106691 GTTCCCCTCCGAAGGGCAGGTTCTTACGTGTTACTCACCCGTCCGCCACT------GGAA 106638 Query 347 GCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCC 399 || | |||| |||| |||||||||||||||| || ||| ||| Sbjct 106637 -----AAACCACTTC------CCGTCCGACTTGCATGTGTTAAGCATGCTGCC 106596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221508845952