Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq72902 277 4e-72 seq40833 241 3e-61 seq11244 140 8e-31 seq13183 111 4e-22 seq52528 104 6e-20 seq27239 96.9 8e-18 >seq72902 Length=152221 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 103074 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 103133 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 103134 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 103193 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 103194 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 103253 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 103254 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 103313 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| |||||||||| ||||| Sbjct 103314 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 103373 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 103374 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 103432 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 103433 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 103477 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 134257 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 134198 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 134197 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 134138 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 134137 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 134078 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 134077 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 134018 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| |||||||||| ||||| Sbjct 134017 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 133958 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 133957 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 133899 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 133898 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 133854 >seq40833 Length=287482 Score = 241 bits (266), Expect = 3e-61 Identities = 301/409 (74%), Gaps = 3/409 (1%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 || ||||||| |||| ||||||||| ||||||||| |||| |||| || ||| || Sbjct 25409 TATTTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCATCCGCAGTAAGACAGAGGATGC 25468 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 ||||||||||||||| | ||||||||||| || |||||||| || | ||||| | || Sbjct 25469 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGT 25528 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 ||| ||| |||||||||| || || | |||||| | |||||||| | | ||| Sbjct 25529 CAAATCCTAGGGCTCAACCCTGGACAAGCGGTGGAAACTACCAAGCTAGAGTACGGTAGG 25588 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || | |||||| | ||| | |||||||||||||||| || | |||||||| || Sbjct 25589 GGAAGAGGGAATTTCCGGTGGATCGGTGAAATGCGTAGAGATCGAAAAGAACACCAACGG 25648 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 |||| || |||||| | | |||||||||||| ||||||| |||||| ||| | Sbjct 25649 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGAAAATGG 25708 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-A 359 |||||||||||| |||||| ||| ||||||||| |||||||| | | | ||| || Sbjct 25709 GATTAGATACCC-AGTAGTCGTAGCCATAAACGATGGATACTAGGCG-CTGTGCGTATCG 25766 Query 360 AGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | | |||| | ||| ||| | ||||||| | ||||||||||| Sbjct 25767 ACCCGTGCAGTGCTGTAGCTAACACGTTAAGTATCCTGCCTGGGGAGTA 25815 >seq11244 Length=389271 Score = 140 bits (154), Expect = 8e-31 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 154 GAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATG 213 |||||| | ||| |||| | | ||||||| |||||| | ||| |||||||||||| Sbjct 73414 GAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATG 73355 Query 214 CGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTG 273 | |||| || | | |||||||| || |||| || |||||| ||| ||| |||||| Sbjct 73354 CATAGAGATCGGAAAGAACACCAATGACGAAAGCACTATGCTGGGCTGACACTAACACTG 73295 Query 274 AGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACG 333 || ||||||| |||||||||| ||||||||||||| ||||| | |||||||||| Sbjct 73294 AGAGACGAAAGCTAGGGGAGCAAATGAGATTAGATACCCTAGTAGTTCTAGCCGTAAACG 73235 Query 334 ATGAATACTA 343 ||| |||||| Sbjct 73234 ATGGATACTA 73225 >seq13183 Length=776958 Score = 111 bits (122), Expect = 4e-22 Identities = 235/342 (69%), Gaps = 14/342 (4%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT-AGGGGGC 60 ||| ||||| |||||||| |||||| ||| |||||||| |||||||| |||| || Sbjct 54952 ACTCGAGGAAGAAGCCCCAACTAACTCTGTGTCAGCAGCCATGGTAATACTCGAGGGTGC 54893 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 || ||| | | ||| | | || ||||||| ||||||| || | | || |||| Sbjct 54892 AAGTGTTCTTTGAAATGATTAGGTATAAAGGGCACGTAGGTAGTGAATCATGTTTCAGGT 54833 Query 121 GAAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAG 176 ||| | | || | | ||| |||| | |||| | || || ||||| Sbjct 54832 TTAAGTCAC---CAAAAACTGGCGGAATGCTCTCAAAACCAATTCA---CTTGAGTGAGA 54779 Query 177 GAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCA 236 || || |||| |||| |||||| |||||||| ||||| | ||||||| ||| Sbjct 54778 CAGAGGAGAGTGAAATTTTATGTGTAG-GGTGAAATCTATAGATCTACGGAGGAATGCCA 54720 Query 237 GTGGCGAAGGCGGCTTGCT-GGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCA 295 |||||||| | | || || | || || || ||| || ||||| |||| |||| Sbjct 54719 AAAGCGAAGGCAGTTCTCTAGGTCCCTA-CTAACGCTGGGGTGTGAAAGTATGGGAAGCA 54661 Query 296 AACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||| |||||||||||||||||||||| ||||| || ||||| Sbjct 54660 AACAAGATTAGATACCCTGGTAGTCCATGCCGTTAATGATGA 54619 >seq52528 Length=502522 Score = 104 bits (114), Expect = 6e-20 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 198 GTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGG 257 |||||| |||||||| ||||||| | | |||||| ||| | ||||| ||| || | Sbjct 476185 GTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGTAAAGGCAGCTCTCTAG 476244 Query 258 ACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTA 317 | || ||| ||| || ||||||| |||||||| ||||||||||||||||| | || Sbjct 476245 ATCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCCGATA 476304 Query 318 GTCCACGCCGTAAACGATGA 337 ||||| |||||||| |||| Sbjct 476305 GTCCATGCCGTAAAAAATGA 476324 >seq27239 Length=826133 Score = 96.9 bits (106), Expect = 8e-18 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 ||||||||| | ||||| |||||||| ||||||| | | ||||| ||| ||||| Sbjct 7911 AGTGGAATTTCGTTTGTAGGGGTGAAATCCGTAGATCTACGAAGGAATGCCAAAAGCGAA 7970 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 ||| ||| |||| || ||| ||| || ||||||| |||||||| ||||||||| Sbjct 7971 GGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATT 8030 Query 305 AGATACCCTGG 315 ||||||||||| Sbjct 8031 AGATACCCTGG 8041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202322843136