Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq72902 194 6e-47 seq13668 145 3e-32 seq71655 98.7 3e-18 seq63518 96.9 1e-17 seq46732 95.1 4e-17 seq43093 89.7 2e-15 seq13264 89.7 2e-15 seq39223 84.2 7e-14 >seq72902 Length=152221 Score = 194 bits (214), Expect = 6e-47 Identities = 398/582 (68%), Gaps = 40/582 (7%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| ||| ||| | | |||||||| | |||||||| ||||| Sbjct 107164 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 107223 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 107224 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 107283 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 107284 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 107343 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 107344 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 107398 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTT 295 || ||| | | ||| ||||||| | |||||||| |||| | | | Sbjct 107399 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATAC---TAGATA 107453 Query 296 TTACCGC-----GGG-------------AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCG 337 | ||| | ||| |||||| ||||| | |||| | | | || Sbjct 107454 TGACCCCAAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCG 107513 Query 338 AGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAAC 397 ||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 107514 AGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAG 107571 Query 398 GAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAG 457 || || | ||| ||||||| |||| ||| || | |||||||||| | || |||||| Sbjct 107572 GAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAG 107630 Query 458 TGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTC 517 ||||||| |||||||| ||||| || ||| || || | |||| |||| || Sbjct 107631 TGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGATC 107689 Query 518 TACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 | ||||||| ||||||| | | ||| |||||||||||||| Sbjct 107690 TGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 107730 Score = 194 bits (214), Expect = 6e-47 Identities = 398/582 (68%), Gaps = 40/582 (7%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| ||| ||| | | |||||||| | |||||||| ||||| Sbjct 130167 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 130108 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 130107 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 130048 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 130047 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 129988 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 129987 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 129933 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTT 295 || ||| | | ||| ||||||| | |||||||| |||| | | | Sbjct 129932 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATAC---TAGATA 129878 Query 296 TTACCGC-----GGG-------------AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCG 337 | ||| | ||| |||||| ||||| | |||| | | | || Sbjct 129877 TGACCCCAAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCG 129818 Query 338 AGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAAC 397 ||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 129817 AGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAG 129760 Query 398 GAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAG 457 || || | ||| ||||||| |||| ||| || | |||||||||| | || |||||| Sbjct 129759 GAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAG 129701 Query 458 TGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTC 517 ||||||| |||||||| ||||| || ||| || || | |||| |||| || Sbjct 129700 TGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGATC 129642 Query 518 TACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 | ||||||| ||||||| | | ||| |||||||||||||| Sbjct 129641 TGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 129601 >seq13668 Length=1630 Score = 145 bits (160), Expect = 3e-32 Identities = 365/546 (67%), Gaps = 39/546 (7%) Strand=Plus/Plus Query 13 AGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAA 72 ||||||| ||| || | | |||||||| | |||||||| ||||| |||||||||| Sbjct 1097 AGGGCGATTGTCACTTCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAA 1156 Query 73 GGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGC 132 | | ||| | || |||||||||||||| ||| |||||||| || || |||||| Sbjct 1157 GCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGTATCAGCAGATGAGT 1216 Query 133 TGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTAT 192 ||||| || |||||||| || | | ||| || |||||||||||| || ||| | Sbjct 1217 TGTGGTTA-GGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCAAAATGCGT 1275 Query 193 TTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTTATGGCTAGGGG 247 | ||| || ||| | || |||| |||||| ||||||||| || ||| Sbjct 1276 TGAGGCGCAGC----AGT-TGACTAGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGC 1330 Query 248 GTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTACCGC----- 302 || | | ||||||| | |||||||| ||| | | | | ||| | Sbjct 1331 CGCA-AGAGCGGTACCAAATCGAGGCAAACTCTAAATAC---TAGATATGACCCCAAACA 1386 Query 303 GGG-------------AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAA 349 ||| |||||| ||||| | |||| | | | ||||||| || | Sbjct 1387 GGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAATAG 1446 Query 350 TCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTG 409 ||||| | || |||||||||| ||||||| ||||||| | | || || || | || Sbjct 1447 CCCGGATCACCATCTAAGGCCCCTAAATGACCGCTAAGTGATA--AAGGAGGTAGGGGTG 1504 Query 410 CTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCT 469 | ||||||| |||| ||| || | |||||||||| | || ||||||||||||| |||| Sbjct 1505 CAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTCAAAGAGTGCGTAATAGCT 1563 Query 470 CACTAGTCGAGGAGTCGGGCGTGGATAAT-AATCGGGTATTAAGTTGTCTACCGAAGCAG 528 |||| ||||| || ||| | || ||| ||| |||| ||| ||||||| | Sbjct 1564 CACTGATCGAGCGCTCTTGCGCCAAAGATGAATGGGG--CTAAGCGATCTGCCGAAGCTG 1621 Query 529 TGGGAT 534 |||||| Sbjct 1622 TGGGAT 1627 >seq71655 Length=895665 Score = 98.7 bits (108), Expect = 3e-18 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 33 TAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGG 92 || || |||| | | |||||||| ||||| ||||||||| | ||| | || ||| Sbjct 86420 TACACTCGAACCTAGGTGATCTATCCATGATTAGGATGAAGCTTGGGTGAAACTAAGTGG 86479 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||||||||||| | | |||||||| || || ||||||| ||||| ||||||||||| || Sbjct 86480 AGGTCCGAACCGATTGATGTTGAAGAACCAGCGGATGAGTTGTGGATAGGGGTGAAATGC 86539 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAA 186 | | ||| | || ||||| ||| || || || Sbjct 86540 CACTCGAACCTAGAGCTAGCTAGTTATCCCCAAA 86573 >seq63518 Length=277298 Score = 96.9 bits (106), Expect = 1e-17 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 ||||| || | |||||||| ||||| ||||||||||| | ||| | || || || Sbjct 86446 GACCCAAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGAAG 86505 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 || ||||| ||| |||||||| ||| | |||||| ||||| ||||||||||| || | Sbjct 86506 TTCTGAACCGACTGATGTTGAAGAATCAACAGATGAGTTGTGGTTAGGGGTGAAATGCCA 86565 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 | ||| || |||||||||||| ||||| Sbjct 86566 CTCGAACCCAAAACTAGCTGGTTCTCCTCGAAA 86598 >seq46732 Length=23192 Score = 95.1 bits (104), Expect = 4e-17 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 48 GTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACT 107 |||||||| ||||| ||||||||||| | ||| | || || | || ||||| ||| Sbjct 21142 GTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGAAATTCTGAACCGACT 21201 Query 108 AATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAA 167 |||||||| ||| | ||||||| ||||| ||||||||||| || | | ||| || Sbjct 21202 GATGTTGAAGAATCAATGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAG 21261 Query 168 ATAGCTGGTTCTCTCCGAAA 187 |||||||||||| ||||| Sbjct 21262 CTAGCTGGTTCTCCTCGAAA 21281 >seq43093 Length=8020 Score = 89.7 bits (98), Expect = 2e-15 Identities = 108/145 (74%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || | ||||| | ||||||||||||| ||||||| ||| || | | | Sbjct 2662 CGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCTGTGATA--A 2605 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || | ||| ||||||| |||| ||| || | |||||||||| | || ||| Sbjct 2604 AGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGGAAG 2546 Query 456 AGTGCGTAACAGCTCACTAGTCGAG 480 ||||| ||| ||||||||| ||||| Sbjct 2545 AGTGCATAATAGCTCACTAATCGAG 2521 Score = 84.2 bits (92), Expect = 7e-14 Identities = 125/175 (71%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | ||||| | |||||| Sbjct 3876 AGTGAGACGATGGGGGATAAGCTTCATTGTCGAGAGGGAAACAGCCCGGATCACCAGCTA 3817 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| ||||||| | | || | | || || || | ||| ||||||| |||| Sbjct 3816 AGGCCCCTAAATGACCGTTCTGTGATA--AAGGAGGTAGGGGTGCAGAGACAGCCAGGAG 3759 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||| || | |||||||||| | || |||||||| ||| |||||||| ||||| Sbjct 3758 GTTTGCCTAGAAGCAGCCA-CCCTTGGAAGAGTGCATAATAGCTCACTGATCGAG 3705 >seq13264 Length=684448 Score = 89.7 bits (98), Expect = 2e-15 Identities = 151/211 (72%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 350 TCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTG 409 |||||| | ||||||||||||| ||||||| ||| ||| | | || || || | | Sbjct 392904 TCCGGATCACCAGCTAAGGCCCCTAAATGACTGCTCAGTGATA--AAGGAGGTAGGGGTA 392847 Query 410 CTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCT 469 | ||||| | |||| ||| | | |||||||||| | || ||||||||| ||| |||| Sbjct 392846 CAGAGACAACCAGGAGGTTTTCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCATAATAGCT 392788 Query 470 CACTAGTCGAGGAGTC-GGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAG 528 |||| ||||| || ||| || || | |||| ||||| ||| ||||||| | Sbjct 392787 CACTTATCGAGCGCTCTTTGCGCCGAAGATGAACGGG-GCTAAGTGATCTGCCGAAGCTG 392729 Query 529 TGGGATCATTTATATG-ATCGGTAGGGGAGC 558 |||||| | | ||| |||||| ||||||| Sbjct 392728 TGGGAT-GTAAAAATGCATCGGTTGGGGAGC 392699 >seq39223 Length=125225 Score = 84.2 bits (92), Expect = 7e-14 Identities = 125/175 (71%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | ||||| | |||||| Sbjct 8270 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTA 8211 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| |||| || ||| || | | || || || | ||| ||||||| |||| Sbjct 8210 AGGCCCCTAAATAACCGCTCTGTGATA--AAGGAGGTAGGGGTGCAGAGACAGCCAGGAG 8153 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||| | | |||||||||| | || ||||||||| ||| |||||||| ||||| Sbjct 8152 GTTTTCCTAGAAGCAGCCA-CCCTTAAAAGAGTGCATAATAGCTCACTGATCGAG 8099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688368247808