Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq72902 127 4e-27 seq11244 100 6e-19 seq40833 89.7 1e-15 >seq72902 Length=152221 Score = 127 bits (140), Expect = 4e-27 Identities = 195/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| || | Sbjct 103110 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 103062 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 103061 GC------TTCTTCTCCGAGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 103009 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 103008 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 102949 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | || |||| || | ||| || Sbjct 102948 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCTTCTCGGACCAGCTACTGAT 102889 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 102888 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 102850 Score = 127 bits (140), Expect = 4e-27 Identities = 195/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| || | Sbjct 134221 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------T 134269 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | | |||||||||| || | |||| | ||||| ||| ||||| Sbjct 134270 GC------TTCTTCTCCGAGAAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGC 134322 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 134323 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 134382 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | || |||| || | ||| || Sbjct 134383 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCTTCTCGGACCAGCTACTGAT 134442 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || || | || |||| ||||| Sbjct 134443 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 134481 >seq11244 Length=389271 Score = 100 bits (110), Expect = 6e-19 Identities = 101/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||||| ||| ||||| | | ||| |||| || Sbjct 73511 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTT 73569 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||| | |||||||||||||||||||||| ||| ||||||||||| Sbjct 73570 TCGCCCATTGCAGAAAATTGCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 73629 Query 201 TTCCAATGTG 210 | ||||| || Sbjct 73630 TCCCAATATG 73639 >seq40833 Length=287482 Score = 89.7 bits (98), Expect = 1e-15 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 69 TTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGC 128 |||||| | | |||||||||| | | |||| | ||||| ||| ||||| | | || Sbjct 25398 TTATTCTCCGAGAAAAGAAGTTCATGACCCGTGGG-CCTTCTACCTCCACGCGGCATTGC 25340 Query 129 TGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGG 188 | |||| || ||| |||||| || ||||| ||||||||||||| ||||||||||| Sbjct 25339 TCCATCAGGCTTTCGCCCATTGCGGAAAATTCCCTACTGCTGCCTCCCATAGGAGTTTGG 25280 Query 189 ACCGTGTCTCAGTTCCAATGTGG 211 ||||||| || |||| ||||| Sbjct 25279 GTCGTGTCTAAG-TCCAGTGTGG 25258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068020823424