Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendrobium_20catenatum_20[refseq_20GCF_5F001605985.1_202016-02-26] 72,902 sequences; 1,008,684,112 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq55201 152 4e-32 seq25504 147 2e-30 >seq55201 Length=1221137 Score = 152 bits (168), Expect = 4e-32 Identities = 365/547 (67%), Gaps = 10/547 (2%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || || |||||||||||||| | ||| |||||||| | || ||||| Sbjct 300898 ATGTACAAGAAAGCAGAGGCTTCCTTCTGGACTGCGGAAGAGGTCGACCTCTCACAAGAC 300957 Query 61156 ATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211 || | ||||||| | ||| | || || | || ||| | | || || | Sbjct 300958 CTGCGTCACTGGGATCACACACTTACCTC-CGACGAGCGCCACTTCGTCACCCACGTCCT 301016 Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271 || |||||||||||||| || ||||||||| |||||| || | || ||| || Sbjct 301017 CGCCTTCTTTGCCGCTTCAGATGGTATCGTCCTTGAGAACCTAGCCGGCCGATTCATGCG 301076 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 || || ||| | ||||||| || ||||||||||| ||||| ||||| || || | Sbjct 301077 CGAAGTTCAACTCCCGGAGGCTCGCGCATTCTACGGCTTTCAGATCGCCATTGAAAACAT 301136 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGA 61391 ||||| || ||||| ||| ||||| |||| || ||||||| || |||| Sbjct 301137 TCACTCCGAAATGTATAGTCTTCTCCTCGAGACTTACATCAAAGACTCAAAGGAAAAATC 301196 Query 61392 ACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451 | | || |||||||||||| || || || || || || | ||||| | Sbjct 301197 CCTCCTTTTTCGTGCCATCGAGACCATCCCCTGCGTCGCTCGCAAGGCTCAGTGGGCGCT 301256 Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 ||||| | | | | |||||||| ||| || | || || || || || Sbjct 301257 GCGCTGGATTGAC---GCCTCTGATACATTTGCTGAGCGGATTCTCGCTTTCGCTTGCGT 301313 Query 61512 CGAGGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGAC 61570 || ||| | || ||| ||| | | | || ||| ||||| ||| | ||||| || || Sbjct 301314 TGAAGGTATTTTCTTCTCTGGCAGCTTCTG-CGCCATCTTCTGGCTCAAGAAGCGCGGTT 301372 Query 61571 TTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTG 61630 | ||||||||||| || ||| ||| ||| ||||||| || || ||||| | ||||| | Sbjct 301373 TGATGCCCGGTCTCACATTCTCCAACGAGCTGATATCTCGTGATGAGGGTCTCCATTGCG 301432 Query 61631 ATTTTGC 61637 | ||||| Sbjct 301433 ACTTTGC 301439 >seq25504 Length=639989 Score = 147 bits (162), Expect = 2e-30 Identities = 551/848 (65%), Gaps = 27/848 (3%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||| | ||||| ||||| | ||| ||||| Sbjct 367935 ATGTACAAGAAAGCCGAAGCCTCCTTCTGGACAGCAGAGGAAGTCGACCTCTCCCAAGAC 367876 Query 61156 ATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAAC---ATTTCATTAAACATGTGTTG 61212 | | ||||||| | | | | ||| | | | ||| | | || || | Sbjct 367875 CTCCGTCACTGGGATCAATCCCTCACCTCTGACGAGCGCCACTTCGTCACCCACGTTCTC 367816 Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || |||||||| || || || || |||||| ||||| | | || ||| | | Sbjct 367815 GCCTTCTTTGCTGCATCTGATGGAATCGTCCTCGAGAACCTTGCCGGCCGCTTCATGAGG 367756 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 ||||| || | ||||||| || ||||| || || ||||||||||| || || || Sbjct 367755 GAGGTACAGCTCCCGGAGGCTCGCGCCTTCTATGGATTTCAGATTGCCATCGAAAACATC 367696 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGA 61391 ||||| ||||||||||| |||| |||| || ||||||| || | | | | | Sbjct 367695 CACTCCGAGATGTACAGCCTTCTTCTCGAAACATACATCAAAGATTCCTGTGAGAAAT-- 367638 Query 61392 ACGAT-TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCT 61450 | || | ||| ||||||||||||| | || || || || || | |||||| Sbjct 367637 CCCATCTCTTCCATGCCATCGAGACCGTCCCCTGCGTCGCCCGCAAGGCTCAGTGGGCCC 367578 Query 61451 TCAATTGGATC-ACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTG 61509 | ||||||| || | ||| | |||||| || || | || || ||||| Sbjct 367577 TACGTTGGATCGACGCCTCCAA----TTCATTTGCAGAGCGCATCCTTGCGTTTGCTTGC 367522 Query 61510 GTCGAGGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGG 61568 || ||||| | || ||| || | | | || || ||||| ||| | ||||| | || Sbjct 367521 GTTGAGGGAATCTTCTTCTCCGGTAGCTTCTG-TGCCATCTTCTGGCTCAAGAAGAGAGG 367463 Query 61569 ACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTG 61628 || ||||||||||| |||||| ||| ||| | ||||| || |||||||| |||| || Sbjct 367462 GCTAATGCCCGGTCTCACCTTCTCCAACGAGCTCATATCTCGTGACGAGGGTCTGCACTG 367403 Query 61629 TGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGT 61688 ||| ||||| || || || | || || ||| | || ||||| | || Sbjct 367402 TGACTTTGC---TTGCCTTCTCTACAGCCTCCTCAACAATAAGCTCTCTGAGGATAGGGT 367346 Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTG 61746 | |||||| || || || || ||| || ||| || |||| || ||| | Sbjct 367345 TCGAGAGATTATTTCCGATGCTGTCGATATAGAGAGGGAGTTCGTCTG--CGATGCTCTC 367288 Query 61747 CCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCC 61806 ||| | || | || |||||| || || ||| ||||| || || ||||||||| Sbjct 367287 CCCTGTGCTCTTGTGGGGATGAATGCTGATCTCATGAGCCAGTACATAGAGTTTGTTGCC 367228 Query 61807 GACCGTC-TGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAA--AAACCCATTT 61863 || |||| | ||||| | | |||| | | ||| | | || | | | |||||||||| Sbjct 367227 GATCGTCTTCTTGGT-GCTCTGGG--TTACGCGAAGATGTACGAGGTATCAAACCCATTT 367171 Query 61864 GATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGC 61923 || | ||||| | ||||| || | || || || || ||||| ||||| | || || Sbjct 367170 GACTGGATGGAGCTTATTTCCCTTCAGGGAAAAACTAACTTTTTTGAGAAGAGGGTCGGG 367111 Query 61924 GACTATCA 61931 || || || Sbjct 367110 GAATACCA 367103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397214763565280