Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq10464 141 4e-31 seq13659 129 2e-27 >seq10464 Length=52742 Score = 141 bits (156), Expect = 4e-31 Identities = 131/166 (79%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 32 CCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAA 91 || || || |||| ||||||||||||||||| | || |||| |||||| | | || || Sbjct 38653 CCGTCAACAAGTCAGATTGTTTGGGAATGCAGCCCAAATTGGGCGGTAAACTCCGTCCAA 38712 Query 92 AGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCA 151 ||||||||| ||| |||||||||||| | ||||||| | || ||||||||||||| | Sbjct 38713 GGCTAAATATAGGCGAGAGACCGATAGTGAACAAGTACCGCGAGGGAAAGATGAAAAGGA 38772 Query 152 CTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||||| ||||||||| ||| | | |||||||| || ||||||| Sbjct 38773 CTTTGAAAAGAGAGTCAAAGATTGCTTGAAATTGCTGGGAGGGAAG 38818 Score = 125 bits (138), Expect = 3e-26 Identities = 165/221 (75%), Gaps = 7/221 (3%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCAAAC 466 || |||||| ||||||||||||||||||| |||| ||| ||| ||||| | |||| Sbjct 38919 CCTGTCTTGAAACACGGACCAAGGAGTCTGACATACGTGCAAGTCGATGGGTTCTTAAAC 38978 Query 467 CCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGA-GGGTG-CACCATCGACC 523 | | | || || ||| ||| ||| ||||| || | | |||| ||||| || Sbjct 38979 CTGGGATGCACAAGGAAGCTGAT--GAG-TGGGAGGCCCTCACGGGTCACACCACTAGCC 39035 Query 524 GATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGG 583 || |||||| | | || || || |||| ||||| |||| |||||||||||||||| Sbjct 39036 GACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGG 39095 Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||||||||||| | |||||||||||||||||||||||| Sbjct 39096 TGAACTATGCCTAAGCGGGGTGAAGCCAGAGGAAACTCTGG 39136 >seq13659 Length=247526 Score = 129 bits (142), Expect = 2e-27 Identities = 133/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || || || |||||||| |||||||||||||||||| | || || |||||| | | Sbjct 183397 GAGGCGCCGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCAGGCGGTAAACTCC 183338 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 || || |||||||| ||| ||||||||||| ||||||| | || |||||||| Sbjct 183337 GTCCAAGGCTAAATACAGGCGGTGGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGG 183278 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||| |||||| ||||||||| ||| || | |||||||| | ||||||||| Sbjct 183277 AAATGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 183224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079625997800