Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq11803 111 2e-22 seq8293 78.8 1e-12 >seq11803 Length=148408 Score = 111 bits (122), Expect = 2e-22 Identities = 174/246 (71%), Gaps = 25/246 (10%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||| ||| |||||| ||||| || ||||||| | |||| | ||| || |||| Sbjct 41276 CCTTCTGGCACTAGGCAGGTGTCAGCCCCTATACATGGTCTTAT-GACTTTGCGGAGACC 41218 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCC---CTCTATTCTCTGCGACCACCACCAGCTCAAC 122 ||||||||| |||||||||||| || || | || |||||||| || Sbjct 41217 TGTGTTTTTGGTAAACAGTCGC--CCAGGCT-TGGTCACTGCGACCCCCT---------- 41171 Query 123 ACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATT 182 || | || || |||||| |||||| | |||||| ||||| ||||||| || || Sbjct 41170 ------TTTGCGAG-AG-GGCACCTCTTCTCTCAAAGTTATGGGGCTATTTTGCTGAGTT 41119 Query 183 CCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 ||||| | |||| | || || ||| ||||||||||||| |||||||||||||||| Sbjct 41118 CCTTAGAGAGAGTTGTCTCGCACCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTT 41059 Query 243 ACGGTA 248 |||| Sbjct 41058 CGGGTA 41053 >seq8293 Length=96422 Score = 78.8 bits (86), Expect = 1e-12 Identities = 84/111 (76%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 138 AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTC 197 || ||||| ||||||| | |||||| ||||| |||||||| | ||||||| | || | Sbjct 16327 AGGGGCACTCCTTCTCTCAAAGTTATGGGGCTATTTTGCCAAGTTCCTTAGAGAGAGCTG 16386 Query 198 ACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | || | ||| ||||||| ||| | |||||||||||||||| |||| Sbjct 16387 TCTCGCGCCCCTAGGTATTCTTTACTTACCCACCTGTGTCGGTTTCGGGTA 16437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694282708028