Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq8150 206 7e-51 seq15003 201 3e-49 seq4262 89.7 1e-15 seq4627 82.4 2e-13 >seq8150 Length=87177 Score = 206 bits (228), Expect = 7e-51 Identities = 216/284 (76%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 ||| |||||||||| || || ||||||||||| ||| | ||||||| | | |||| Sbjct 50354 CTGTATCTTCACAGAAATATCTATTTCACTGAGCCTCTCTTCGAGACAGTGTCCAGATCG 50413 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 50414 TTACGCCTCTCGTGCAGGTCAAAACTTACCCGACAAGGAATTTYGCTACCTTAGGACCGT 50473 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAAC 186 ||| ||||||| ||||||| |||||||||||| || ||||| | | || | || Sbjct 50474 TATAGTTACGGTCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCTCTGTCATCAGTTCAC 50533 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | || || ||||||||| |||| |||||| ||| |||| | ||| || | Sbjct 50534 CAACTTCCTTGACTTTCCGGCACTAGGCATGCGTCAGCCCCCATACATGGTCTTACGACT 50593 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGT 290 |||| ||| || ||||||| |||| |||||| |||||||| Sbjct 50594 TTGCGGAGACCTATGTTTTTGGTAAATAGTCGCCCGGGCCTGGT 50637 >seq15003 Length=136562 Score = 201 bits (222), Expect = 3e-49 Identities = 217/288 (75%), Gaps = 4/288 (1%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || | ||||||||||| ||| ||||||| ||| |||||| Sbjct 31299 GCATCTTCACAGACATGTAGATTTCACTGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 31358 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||| ||| |||| ||||||| | ||||||||||||||||||||||||||| ||| Sbjct 31359 ACGCCTTTCTTGCGGGTCAGAACTTAACTGACAAGGAATTTCGCTACCTTAGGACCATTA 31418 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCC 188 | |||| | |||||||| |||||||||||| || ||||| | | || | ||| Sbjct 31419 TAGTTATGCCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGTTCACCA 31478 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 || || |||||| ||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 31479 AATTCCTTGACCTTCTGGCACGGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 31538 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTC 296 || ||| ||||||||| ||||||||| | ||| |||| |||| Sbjct 31539 GCGGAGACMTGTGTTTTTGGTAAACAGTCACTCGGGCTTGGTCACTTC 31586 >seq4262 Length=99182 Score = 89.7 bits (98), Expect = 1e-15 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 ||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 15735 TCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGAC 15676 Query 128 CGTT 131 ||| Sbjct 15675 AGTT 15672 >seq4627 Length=97678 Score = 82.4 bits (90), Expect = 2e-13 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 125 ||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 89342 TCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGG 89399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260580166912