Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq8150 262 8e-68 seq15003 235 1e-59 seq11803 131 4e-28 seq11348 84.2 5e-14 seq4262 80.6 6e-13 seq10368 75.2 2e-11 seq5797 75.2 2e-11 seq11741 73.4 8e-11 seq8880 73.4 8e-11 seq4627 73.4 8e-11 >seq8150 Length=87177 Score = 262 bits (290), Expect = 8e-68 Identities = 270/351 (77%), Gaps = 7/351 (2%) Strand=Plus/Plus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||||||| | || | ||||||| ||| || | | ||||||||| ||| |||||||| Sbjct 50358 ATCTTCACAGAAATATCTATTTCACTGAGCCTCTCTTCGAGACAGTGTCCAGATCGTTAC 50417 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 |||| |||||| |||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 50418 GCCTCTCGTGCAGGTCAAAACTTACCCGACAAGGAATTTYGCTACCTTAGGACCGTTATA 50477 Query 129 GTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAGAT 184 ||||||| ||||||| || ||||||| || | ||||| | | || | || | Sbjct 50478 GTTACGGTCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCTCTGTCATCAGTTCACCAAC 50537 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 |||| || |||| |||| |||| |||||||| || |||||| ||||| |||||| || Sbjct 50538 TTCCTTGACTTTCCGGCACTAGGCATGCGTCAGCCCCCATACATGGTCTTACGACTTTGC 50597 Query 245 AGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGAC 304 || |||| ||||||||||||| |||||| |||||| || ||| | || | | Sbjct 50598 GGAGACCTATGTTTTTGGTAAATAGTCGCCCGGGCCTGGTCACTGTGACCCCCTTTTGTG 50657 Query 305 AG---GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||| |||| |||||| |||| |||||||||||||||||| Sbjct 50658 AGGGTGCACCCCTCCTCCTGAAGTTATGGGGCTATTTTGCCGAGTTCCTTA 50708 >seq15003 Length=136562 Score = 235 bits (260), Expect = 1e-59 Identities = 219/277 (79%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || ||||||| ||| || | ||||||||||||| |||||| Sbjct 31299 GCATCTTCACAGACATGTAGATTTCACTGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 31358 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||| |||||||| ||||||| | ||||||||||||||||||||||||||| ||| Sbjct 31359 ACGCCTTTCTTGCGGGTCAGAACTTAACTGACAAGGAATTTCGCTACCTTAGGACCATTA 31418 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 |||||| | |||||||| || ||||||| || | ||||| | | || | || Sbjct 31419 TAGTTATGCCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGTTCACCA 31478 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| |||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 31479 AATTCCTTGACCTTCTGGCACGGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 31538 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGC 279 || || || |||||||||||||||||||| || |||| Sbjct 31539 GCGGAGACMTGTGTTTTTGGTAAACAGTCACTCGGGC 31575 >seq11803 Length=148408 Score = 131 bits (144), Expect = 4e-28 Identities = 132/170 (78%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| |||||| |||| |||||| |||||| ||||||||| ||||| ||||| || | Sbjct 41282 CCTTGACCTTCTGGCACTAGGCAGGTGTCAGCCCCTATACATGGTCTTATGACTTTGCGG 41223 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC----TGTCATAG 302 | ||||||||||||||||||||||||| ||| | || ||||| || | | || Sbjct 41222 AGACCTGTGTTTTTGGTAAACAGTCGCCCAGGCTTGGTCACTGCGACCCCCTTTTGCGAG 41163 Query 303 ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | |||||| |||||| | |||||| |||| ||||||| |||||||||| Sbjct 41162 A-GGGCACCTCTTCTCTCAAAGTTATGGGGCTATTTTGCTGAGTTCCTTA 41114 >seq11348 Length=153403 Score = 84.2 bits (92), Expect = 5e-14 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 49 GACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAA 104 || |||||||| |||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 38317 GAGAGTGCCCAGATCGTTACACCTTTCGTGCGGGTCGGAACTTACCCGACAACGAA 38372 >seq4262 Length=99182 Score = 80.6 bits (88), Expect = 6e-13 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 ||||||| || ||||||| ||||| ||||| ||||||||||||||||||||||||||| Sbjct 15735 TCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGAC 15676 Query 122 CGTT 125 ||| Sbjct 15675 AGTT 15672 >seq10368 Length=53793 Score = 75.2 bits (82), Expect = 2e-11 Identities = 41/41 (100%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 99 AAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGC 139 ||||||||||||||||||||||||||||||||||||||||| Sbjct 49945 AAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGC 49985 >seq5797 Length=94019 Score = 75.2 bits (82), Expect = 2e-11 Identities = 78/102 (76%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 254 TGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACAGG---CAC 310 |||||||||||||| ||| | |||||| || | ||| || | | ||| | | Sbjct 46102 TGTTTTTGGTAAACGGTCTCCCGGGCCTGGTCACAGCGACCCCCTTTTGCGAGGGGGCGC 46161 Query 311 CCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||||||||| ||||||||||| |||||||||||||||||| Sbjct 46162 CCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 46203 >seq11741 Length=40959 Score = 73.4 bits (80), Expect = 8e-11 Identities = 46/50 (92%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 95 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTT 144 ||||||||||||||||||||||||||| |||| |||||| ||||||| || Sbjct 28249 CGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGCTT 28298 >seq8880 Length=74170 Score = 73.4 bits (80), Expect = 8e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 307 GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||||||||||| |||||||||||||||||||| ||||||||| || |||||| Sbjct 3827 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCGGAGTTCCTTCGACATGGTTCTC 3770 >seq4627 Length=97678 Score = 73.4 bits (80), Expect = 8e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 119 ||||||| || ||||||| ||||| ||||| ||||||||||||||||||||||||| Sbjct 89342 TCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGG 89399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062214759936