Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq17196 365 1e-98 seq568 322 1e-85 seq9737 143 8e-32 seq12203 111 5e-22 seq9503 107 6e-21 seq4262 102 2e-19 seq10997 91.5 4e-16 seq9396 82.4 2e-13 seq14493 77.0 1e-11 seq8867 75.2 3e-11 seq8592 75.2 3e-11 >seq17196 Length=12150 Score = 365 bits (404), Expect = 1e-98 Identities = 380/493 (77%), Gaps = 8/493 (2%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| ||||| |||||||||||||||||| ||| |||||| ||||||||| |||||| Sbjct 5865 CGCAAGAATGAAAATCAAAGGAATTGACGGGGGCCCACACAAGTGGTGGAGCACGTGGTT 5924 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| |||| |||||||||||||||| |||||||| | ||| ||||| || | Sbjct 5925 TAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCATGAATCCTCTTGAAA 5984 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACA--GGTGATGCATGGTTGTCGTCAGCTCG 184 ||||| | |||| |||| | | |||| |||| ||||||| ||||||||||||| Sbjct 5985 GAGAGGGGTGCCCTC---GGGAATGCG-GACATAGGTGGTGCATGGCTGTCGTCAGCTCG 6040 Query 185 TGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATC 244 |||| | || |||||||||||||| ||||||||||||||||| | |||||||||| Sbjct 6041 TGTCATAAGTTGTTGGGTTAAGTCTTGCAACGAGCGCAACCCTCGTGTTTAGTTGCCACT 6100 Query 245 ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACG 304 || | ||| || || || | ||| ||||||| || ||||||||||| | ||| || | Sbjct 6101 ATGA-GTTTGGAACCCTGAACAGACCGCCGGTGTTAAGCCGGAGGAAGGAGAGGATGAGG 6159 Query 305 TCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAG 364 ||| |||||||||||||||| | ||| |||||||||||||||||| |||||| Sbjct 6160 CCAAGTCATCATGCCCCTTATTCCCTAGGCGACACACGTGCTACAATGGGTGGGACAAAG 6219 Query 365 GGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGT 424 || |||| | ||||| ||| || ||| ||| | ||||| | |||||| || Sbjct 6220 GGTCGCGATCTCACGAGGGTGAGCTAAATCCAAAAACCCATCCTCAGATTGGATTGCAGG 6279 Query 425 CTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATC-AGCATGCTACGGT 483 |||||||||| || |||| || ||||||||||||||||| |||| | ||| | ||| Sbjct 6280 CTGCAACTCGCCTGCATGAGGCAGGAATCGCTAGTAATCGCCGATCAACCATACGGTGGT 6339 Query 484 GAATACGTTCCCG 496 |||| | |||||| Sbjct 6340 GAATCCATTCCCG 6352 >seq568 Length=9593 Score = 322 bits (356), Expect = 1e-85 Identities = 369/490 (75%), Gaps = 6/490 (1%) Strand=Plus/Plus Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67 ||||| ||||||||||||||||||| |||| ||| |||||| | ||||||||||||||| Sbjct 4785 GCAAGAATGAAACTCAAAGGAATTGATGGGG-CCCACACAAGTGATGGAGCATGTGGTTT 4843 Query 68 AATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGAT 127 |||||| |||| || |||||||||||||| |||||||| || | ||||| || | Sbjct 4844 GATTCGATGCAAAGCAAAGAACCTTACCAAGGCTTGACATGCTACAAATCCTCTTGAAAG 4903 Query 128 AGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGT 187 ||||| | |||| || || || ||| ||| ||||||| | || |||||| ||| Sbjct 4904 AGAGGGGTGCCCTCGGGAATACGGAC--ACAAGTGGTGCATGGCTTTCATCAGCTTGTGC 4961 Query 188 CGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATT 247 | | || |||||||||||||| | |||| | |||||| || | |||||||||| || Sbjct 4962 CATAAGGTGTTGGGTTAAGTCTCACAACAAACGCAACACTCGTGTTTAGTTGCCACTATG 5021 Query 248 AAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCA 307 | ||| || || |||| ||| ||| ||| || ||||||||||| ||| | | || Sbjct 5022 A-GTTTGGAACCCTAAACAGACCGCCAGTGTTAAGCCGGAGGAAGGAAAGGATAAGGCCA 5080 Query 308 AATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGC 367 | |||||||||| |||||| | || |||| | ||||||||||| || |||||||| Sbjct 5081 AGTCATCATGCCTCTTATGCCCTAGGTGACACTCATGCTACAATGGGCAGGACAAAGGGT 5140 Query 368 AGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTG 427 |||| | ||||| |||||| ||| ||| || || ||||||||||| || ||| Sbjct 5141 CGCGATCTCACGAGGGTGAGCAAACTCCAAAAACCCGTCCTTAGTTCGGATTGCAGGCTG 5200 Query 428 CAACTCGACTATATGAAGCTGGAATCGCTAGTAATCG-TAGATCAG-CATGCTACGGTGA 485 |||||||||| |||||| ||||||||||||||||| | |||| ||| | |||||| Sbjct 5201 CAACTCGACTGCGTGAAGCAGGAATCGCTAGTAATCGCGTGGTCAGCCATACGGCGGTGA 5260 Query 486 ATACGTTCCC 495 || | ||||| Sbjct 5261 ATCCTTTCCC 5270 >seq9737 Length=173456 Score = 143 bits (158), Expect = 8e-32 Identities = 147/188 (78%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 316 TGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAGCGAAA 374 || |||||||| ||||| |||||||||||||||||| |||| |||| ||| ||| | Sbjct 69013 TGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGG-CAATGACAATGGGAAGCAAGG 68955 Query 375 CCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCG 434 | | ||| ||| ||||| | || ||| ||||||||||||||| ||||||||||| Sbjct 68954 CTGTAAGGCGGAGCGAATCCGAAAAGATTGC-CTCAGTTCGGATTGTTCTCTGCAACTCG 68896 Query 435 ACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCC 494 | |||||| || |||||||||||||| ||||||||||| |||||||||||| || Sbjct 68895 GGAACATGAAGTTGAAATCGCTAGTAATCACGGATCAGCATGCCGCGGTGAATACGTACC 68836 Query 495 CGCTCCCT 502 || |||| Sbjct 68835 CGGGCCCT 68828 >seq12203 Length=145805 Score = 111 bits (122), Expect = 5e-22 Identities = 78/88 (89%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 9 CAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTA 68 |||| |||| ||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 23899 CAAGAATGAAGTTCAAAGGAATTGACGGG--CCCGCACAAGTGGTGGAGCATGTGGTTTA 23956 Query 69 ATTCGAAGCAACGCGAAGAACCTTACCA 96 |||||| |||| ||||||| |||||||| Sbjct 23957 ATTCGATGCAAAGCGAAGAGCCTTACCA 23984 >seq9503 Length=177012 Score = 107 bits (118), Expect = 6e-21 Identities = 154/211 (73%), Gaps = 12/211 (6%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTC--AAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGC 58 |||| |||||| |||||||| ||||| ||||| |||||||||||||||| ||||||| Sbjct 96392 TACGTTCGCAAGAATGAAACTCTCAAAGGTATTGATGGGGACCCGCACAAGCTGTGGAGC 96333 Query 59 ATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCT-TGACATCCTCTGACCC 117 ||| ||||||| ||| |||| || |||||||| | | || || || || | | Sbjct 96332 ATGCAGTTTAATCCGATGCAAAGCAAAGAACCTGA--TAGGCTATG----CCGCT-AATC 96280 Query 118 CTCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGT 177 ||| || | ||||| | |||| || |||| | |||| ||||||| |||| Sbjct 96279 ATCTTGAAAGAGAGG--TGCCCTCAGGAATGCAGACACAGTGGTGGTGCATGGCCATCGT 96222 Query 178 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTC 208 ||||||||| ||| || | |||||||| ||| Sbjct 96221 CAGCTCGTGCCGTAAGGTATTGGGTTATGTC 96191 >seq4262 Length=99182 Score = 102 bits (112), Expect = 2e-19 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 16 GAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAA 75 ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 18071 GAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGAT 18130 Query 76 GCAACG 81 ||||| Sbjct 18131 ACAACG 18136 >seq10997 Length=47536 Score = 91.5 bits (100), Expect = 4e-16 Identities = 76/92 (83%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 |||| || |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 1007 GACTACCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCRCATGGCCCTTATG 1066 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT 358 ||||| |||| ||||||||||||| |||| Sbjct 1067 GGCTGGGCCACACCCGTGCTACAATGG-CAAT 1097 >seq9396 Length=66504 Score = 82.4 bits (90), Expect = 2e-13 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 377 GCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGAC 436 |||||| ||| || ||| ||| || |||||||||||||| || |||||||||| | Sbjct 12050 GCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGCC 11991 Query 437 TATATGAAGCTGGAATCGCTAGTAATCG 464 | ||||||| ||||||||||||||||| Sbjct 11990 TGCATGAAGCAGGAATCGCTAGTAATCG 11963 >seq14493 Length=23867 Score = 77.0 bits (84), Expect = 1e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 44 CACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTG 103 ||||||| ||||||||||| ||||||||||| |||| | |||||||||||||| |||| Sbjct 19347 CACAAGCTGTGGAGCATGTTGTTTAATTCGATGCAAAGTGAAGAACCTTACCAGGGCTTG 19288 Query 104 AC 105 || Sbjct 19287 AC 19286 >seq8867 Length=74339 Score = 75.2 bits (82), Expect = 3e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| ||||||||||||||| ||| || ||||||||| |||| || || Sbjct 47141 ACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTGAGTCTCGTAAT 47082 Query 216 GAGC 219 |||| Sbjct 47081 GAGC 47078 >seq8592 Length=79612 Score = 75.2 bits (82), Expect = 3e-11 Identities = 91/123 (74%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 195 TGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGG 254 |||||||||||| | ||||||| | ||||||| | | ||||||| || | | |||| | Sbjct 32524 TGTTGGGTTAAGCCTTGCAACGATCACAACCCTCATGTTTAGTTGTCA-CTATGAGTTTG 32582 Query 255 GCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATC 314 | || || | ||| ||||||| || ||| ||||||| | ||| || | ||| || || Sbjct 32583 GAACCCTGAACAGACCGCCGGTGTTAAGCCGAAGGAAGGAGAGGATGAGGCCAAGTCCTC 32642 Query 315 ATG 317 ||| Sbjct 32643 ATG 32645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503737762560