Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq8150 95.1 1e-17 seq15003 86.0 7e-15 seq4262 86.0 7e-15 seq4627 80.6 3e-13 >seq8150 Length=87177 Score = 95.1 bits (104), Expect = 1e-17 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 43 GCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT-GAGACAGN 101 || |||| || | |||||||| || | | |||||||||||| | | || ||||||| Sbjct 50345 GCAGGTAGTCTGTATCTTCACAGAAATATCTATTTCACTGAGC-CTCTCTTCGAGACAGT 50403 Query 102 NNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 161 ||| || ||||||||||| ||||||||||||||||||||| |||||| Sbjct 50404 GTCCAGATCGTTACGCCTCTCGTGCAGGTCAAAACTTACCCGACAAGGAATTTYGCTACC 50463 Query 162 TTAGGACCGTTA 173 |||||||||||| Sbjct 50464 TTAGGACCGTTA 50475 >seq15003 Length=136562 Score = 86.0 bits (94), Expect = 7e-15 Identities = 108/150 (72%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | ||||||||||| Sbjct 31270 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTAGATTTCACTGAG 31329 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||| ||| |||| ||||||| | | Sbjct 31330 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCTTGCGGGTCAGAACTTAACTG 31388 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| ||| Sbjct 31389 ACAAGGAATTTCGCTACCTTAGGACCATTA 31418 >seq4262 Length=99182 Score = 86.0 bits (94), Expect = 7e-15 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| Sbjct 15731 TACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTT 15672 >seq4627 Length=97678 Score = 80.6 bits (88), Expect = 3e-13 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 166 |||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 89346 TACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGG 89399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547107571764