Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq2443 158 3e-36 seq14912 134 3e-29 >seq2443 Length=220692 Score = 158 bits (174), Expect = 3e-36 Identities = 261/362 (72%), Gaps = 20/362 (6%) Strand=Plus/Plus Query 21 CCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTC 80 ||||| | || |||||| ||||||||||| |||| ||||| | | |||| ||| | Sbjct 157341 CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTT-TCATCCAAGCTT-C 157397 Query 81 AACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCC 140 | |||| ||| ||||||||| ||| | || |||||| || | || ||| | ||||| Sbjct 157398 ATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGTGACAAT-CGCCC 157453 Query 141 TAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATA 200 || |||||||||||| |||||| | || | |||| | || | || Sbjct 157454 TATGAAGACTCGCTTT-CGCTACTCTAG----ATGTGTATAAGA---GACAG-GCCTATG 157504 Query 201 AGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCT 260 |||||| | | |||| | ||| ||| |||| |||| | || | ||||||||||| Sbjct 157505 AGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCACTTTCCCCTCCCACTGCT 157564 Query 261 TGTACGCATA---CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCT 317 || || | |||||||| | ||||||||||| ||| || ||| |||||||| ||| Sbjct 157565 TGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACTG-GGGATTCTTTTCACCT 157623 Query 318 TTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGT 377 |||||||||||||||| ||| |||||||||| ||| |||||||||||||| | | |||| Sbjct 157624 TTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGT 157683 Query 378 CC 379 || Sbjct 157684 CC 157685 >seq14912 Length=21607 Score = 134 bits (148), Expect = 3e-29 Identities = 121/151 (80%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | |||||| |||| ||| | |||||||||||||| ||||||||||||||| Sbjct 19716 ACGGTTTCACGTTCTATTCCACTACCCAC-CCGGGGTTCTTTTCACCTTTCCCTCACGGT 19774 Query 330 ACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTC 389 |||| ||| |||||||||| ||| |||||||||||||| | | |||||| | |||| Sbjct 19775 ACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTRATTC 19834 Query 390 AGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | || || | ||||| || | ||||||| Sbjct 19835 ACACGGGATTCCACGTGCCCCATGCTACTCG 19865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241383514624