Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq8293 111 4e-22 seq9723 104 5e-20 seq610 77.0 8e-12 >seq8293 Length=96422 Score = 111 bits (122), Expect = 4e-22 Identities = 280/413 (68%), Gaps = 22/413 (5%) Strand=Plus/Plus Query 3 ACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCT 62 ||||| ||| | ||||| |||||| | ||||||||| ||||||| | Sbjct 16738 ACTACACCTTTTGGCCTGATCTTAGGCACTGACTCACCCTCCATGGACAAACCTTGTGGA 16797 Query 63 GGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGC 121 |||| ||||| || | || | | ||||||| ||| | || |||||| ||| | Sbjct 16798 GGAAACCTTGCATTTTTGGGGCATTGGATTCCTACCAATGTTTTCGTTACTCAAGCCAAC 16857 Query 122 ATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGA--CAC 177 |||||||| ||| || || | ||| ||| || | | ||||| || || | || Sbjct 16858 ATTCTCACCTCCGCTTCCAC-CGACCCCACTTTCGC--GTTTGCTTC-CCTCTAAGGCAG 16913 Query 178 GACGCTCCCCTACCCAACCACACAGGT-TGCCACAGCTTCGGCGGATAACTTAAGCCCCG 236 ||||||||||||| | || | | | ||||| ||||||||||| || ||||||| Sbjct 16914 AACGCTCCCCTACCGATGCATATTGACATCCCACAACTTCGGCGGATCGCT-AAGCCCCT 16972 Query 237 CTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGG 296 | ||| || ||| || | |||||||||||||| |||||||| |||| || Sbjct 16973 TT-CATCTTCAACGCAAGGGTGCTCAATCAGTGAGCTATTACACACTCTTTAAAGGGTGT 17031 Query 297 CTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCA 356 ||||||| | | |||||||||| | ||| ||| | |||| | ||| || | | | | Sbjct 17032 CTGCTTCTAGGAAAACCTCCTGGCTATCTTTGCACCCCCACCTTATTTATCAGTTA-TTA 17090 Query 357 C--------CACTTAGGGGCCTTAGCTGATGATCTGGGCT-GTTTCCCTCTCG 400 | | |||||||||||||||| ||||||||||| ||||||||||| Sbjct 17091 CTAATGGGTTATTTAGGGGCCTTAGCTGGTGATCTGGGCTATTTTCCCTCTCG 17143 >seq9723 Length=61646 Score = 104 bits (114), Expect = 5e-20 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 ||||||||||||||||||||| |||||||||||||| ||| ||| |||||| ||| Sbjct 10067 AAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCGCTCGATCACTTCCTTTTCCA 10008 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || | ||||||| ||||||| | |||||| |||||||||||||| Sbjct 10007 CTAAGGGATTGCTTAGGGACCTTAGCGTACCATCTGGTCTGTTTCCCTCTCG 9956 >seq610 Length=112592 Score = 77.0 bits (84), Expect = 8e-12 Identities = 75/94 (80%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 210 CAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTG 269 |||||||||| ||| |||| |||||| | ||| || |||| | || || ||||| Sbjct 76046 CAGCTTCGGCAGATCGCTTA-GCCCCGTT-CATCTTCAGCGCAAGGGCGCTCGATCAGTG 76103 Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTC 303 |||||||||||||||||| |||| |||||||||| Sbjct 76104 AGCTATTACGCACTCTTTAAAGGGTGGCTGCTTC 76137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177394673664