Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq10997 93.3 4e-17 seq17196 80.6 2e-13 >seq10997 Length=47536 Score = 93.3 bits (102), Expect = 4e-17 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||| ||| |||| ||||||||||||||| ||||||||||||||||||| Sbjct 1093 CCATTGTAGCACGGGTGTGGCCCAGCCCATAAGGGCCATGYGGACTTGACGTCATCCCCA 1034 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||| || | |||| Sbjct 1033 CCTTCCTCCAGTATCTCAC 1015 >seq17196 Length=12150 Score = 80.6 bits (88), Expect = 2e-13 Identities = 113/156 (72%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||| || |||||| || | ||| ||| ||| ||||||| |||||| | Sbjct 6289 CGAGTTGCAGCCTGCAATCCAATCTGAGGATGGGTTTT-TGGATTTAGCTCACCCTCGTG 6231 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | ||| |||| ||| |||||||| ||||||| ||| ||||||| || Sbjct 6230 AGATCGCGACCCTTTGTCCCACCCATTGTAGCACGTGTGTCGCCTAGGGAATAAGGGGCA 6171 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 ||| |||||| | |||||| | ||||||||||| || Sbjct 6170 TGATGACTTGGCCTCATCCTCTCCTTCCTCCGGCTT 6135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415929732920