Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq568 181 3e-43 seq14134 123 6e-26 seq8909 91.5 4e-16 seq9970 77.0 8e-12 >seq568 Length=9593 Score = 181 bits (200), Expect = 3e-43 Identities = 281/399 (70%), Gaps = 33/399 (8%) Strand=Plus/Minus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATC---AGGCTTGCGCCCATTGTG 67 ||||| |||||||| | | |||| ||||| ||| | || |||||| ||||||||| | Sbjct 4335 ACCCGTAGGCCTTCCACCTCCACGTGGCATTGCTCCGTCGTCAGGCTTTCGCCCATTGCG 4276 Query 68 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGC 127 || |||||||| |||||||||| ||||| |||||| ||||||||| || || ||||||| Sbjct 4275 GAAAATTCCCCATTGCTGCCTCCGGTAGGGGTCTGGGCCGTGTCTCGGTCCCGGTGTGGC 4216 Query 128 TGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187 || |||||||||||||||||||| |||| ||| || ||| || ||| || | |||||| Sbjct 4215 TGATCATCCTCTCAGACCAGCTATTGATCATCGTCTTGGTAAGCTATTGCCTCACCAACT 4156 Query 188 AGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCT 247 |||||||| || | || | || ||| || | || || |||| || Sbjct 4155 AGCTAATCAGATGCGAGTCCCACC-TTAG--------GCGGATTTCTCC--TTTTGCTCC 4107 Query 248 TGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTT 307 | | | || | |||||||| ||||||||| || ||| | ||||||| || || | Sbjct 4106 TCAGCC--TACGAGGTATTAGAAACCGTTTCCCGTTGTTGTTCCCCTCCCAAGGGTAGGT 4049 Query 308 TCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTA 367 || | |||||||||| | ||||||| ||| | | ||||| Sbjct 4048 TCTTACGTGTTACTCACCCATTCGCCACT------GGAA-----ATACCGCTTC------ 4006 Query 368 CCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTC 406 || || ||||||||||||||| || |||| | || |||| Sbjct 4005 CCATTTGACTTGCATGTGTTAAGCATGCCACTAGAGTTC 3967 >seq14134 Length=25678 Score = 123 bits (136), Expect = 6e-26 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||||| |||||| || ||| || ||||| |||||||||| ||| |||||||| Sbjct 21527 CCTTCTTCACTCACGCGATATTGCTAGATTGGGCTTTCGCCCATTGTCCAAGATTCCCCA 21468 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATC 135 |||||||| ||||| ||||| || |||||||||||| |||||||||||| ||||| Sbjct 21467 CTGCTGCCCCCCGTGGGAGTTCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATC 21412 >seq8909 Length=73755 Score = 91.5 bits (100), Expect = 4e-16 Identities = 112/154 (73%), Gaps = 17/154 (11%) Strand=Plus/Minus Query 261 GGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTAC 320 ||||||||| ||| |||||||| ||| | ||||||| ||||| ||| | | |||| Sbjct 24017 GGTATTAGCAACCATTTCCAGTTGTTGTTCCCCTCCCAATGGCAGGTTCTTACGCGTTAC 23958 Query 321 TCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGC 380 |||||||| ||||||| ||| || || |||| ||||||||||||| Sbjct 23957 TCACCCGTTCGCCACT------GGAAACACCA-----CTTC------CCGTTCGACTTGC 23915 Query 381 ATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||| || |||| ||| |||||| ||||| Sbjct 23914 ATGTGTTAAGCATGCCACCACCGTTCATCCTGAG 23881 >seq9970 Length=171381 Score = 77.0 bits (84), Expect = 8e-12 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 95 GGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGAC 144 ||||||||| |||||||||||| |||||||||||| |||||||||||||| Sbjct 119515 GGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGAC 119564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222186862336