Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq568 206 6e-51 seq17196 183 7e-44 seq16103 78.8 2e-12 seq12548 77.0 8e-12 >seq568 Length=9593 Score = 206 bits (228), Expect = 6e-51 Identities = 252/344 (73%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| |||||||| ||||||||| ||||||||| || ||| || | | Sbjct 4376 TGAGGAATAAGCATTGGCTAACTCTGTGCCAGCAACCGCGGTAAGACAGAGGATGCAAAC 4435 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 ||||| || ||| | |||||||||| || |||||||| || | || | | | ||| Sbjct 4436 GTTATTCGAAATGATTGGGCGTAAACTGTCTGTAGGTGGCTTTTCAAATATGCCATCAAA 4495 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 4496 TCCCAGGGCTCAACCCTGGACAGGCAGTGGAAACTACCAAGCTTGAGTACTGTAGGGGCA 4555 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| ||| || |||||| | || || || | |||||||| | | ||| Sbjct 4556 GAGGGAATTTTTGGTGGAGCAGTAAAATGCATTGAGATCAGAAAGAACACCAATAGTGAA 4615 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| |||||||||| ||||| Sbjct 4616 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 4675 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT 348 ||| ||||| ||||||| ||||||||||||| ||||||||||| Sbjct 4676 AGAGACCCTAGTAGTCCTAGCCGTAAACGATGGATACTAGGTGT 4719 >seq17196 Length=12150 Score = 183 bits (202), Expect = 7e-44 Identities = 245/341 (72%), Gaps = 0/341 (0%) Strand=Plus/Plus Query 68 ATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGC 127 ||||||||| | |||| |||||| || |||||||| || | ||||| | || ||| | Sbjct 5520 ATCCGGAATGATTGGGTGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAATCC 5579 Query 128 TATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGT 187 || |||||||||| || || | |||||| | |||||||| | | ||||||| Sbjct 5580 TAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTAGAGTACGGTAGGGGCAGAG 5639 Query 188 GGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGC 247 | |||| | || ||||||||||||| | || || | | |||||||| ||||||| || Sbjct 5640 GAAATTTTTGGTTGAGCGGTGAAATGCATTGAGATCGGAAAGAACACCAATGGCGAAAGC 5699 Query 248 GGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGA 307 ||||||| | | || |||||||| ||||||| |||||||||| |||||||| Sbjct 5700 ACTTTGCTGGGCCGACACAAACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGA 5759 Query 308 TACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCC 367 |||| ||||| | ||| ||||| ||| ||||||||||| | | | || | | Sbjct 5760 GACCCCAGTAGTTCTAGCCATAAACAATGGATACTAGGTGTTGTGCGACTCAACCCATGC 5819 Query 368 GGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 |||| | ||| ||| | ||||||| | || ||||||||| Sbjct 5820 AGTGCTGTAGCTAACACGTTAAGTATCCTACTTGGGGAGTA 5860 >seq16103 Length=237873 Score = 78.8 bits (86), Expect = 2e-12 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 287 TGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||||| ||||||||||||||||||| ||||||| |||||||||||||| Sbjct 151183 TGGGGAGCGAACAGGATTAGATACCCTGTTAGTCCATGCCGTAAACGATGA 151233 >seq12548 Length=254116 Score = 77.0 bits (84), Expect = 8e-12 Identities = 76/99 (77%), Gaps = 6/99 (6%) Strand=Plus/Minus Query 12 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC------GTAGGGGGCTAGCG 65 |||||||||||||||| | || |||| |||| ||||| || || ||| || || | Sbjct 198656 GAAGCCCCGGCTAACTTCATGACAGCGGCCGTGGTAAGACCGGGGGGTGGGGCGCAAGTG 198597 Query 66 TTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGT 104 || | || ||| ||||||| ||||||| |||||||||| Sbjct 198596 TTCTTCGAAATGACTGGGCATAAAGGGCACGTAGGTGGT 198558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202990210048