Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq8293 91.5 5e-16 seq9592 86.0 2e-14 seq876 78.8 3e-12 >seq8293 Length=96422 Score = 91.5 bits (100), Expect = 5e-16 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 48 GTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACT 107 |||||||| ||||| ||||||||||| | | | | || |||||| ||||| ||| Sbjct 17540 GTGATCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCTGAACCGACT 17481 Query 108 AATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAA 167 |||||||| ||| || ||||||| ||||| | ||||||||| || | | ||| || Sbjct 17480 GATGTTGAAGAATCAGTGGATGAGTTGTGGTTGGGGGTGAAATGCCACTCGAACCCAGAG 17421 Query 168 ATAGCTGGTTCTCTCCGAAA 187 | ||| |||||||| |||| Sbjct 17420 CTTGCTAGTTCTCTCTGAAA 17401 Score = 78.8 bits (86), Expect = 3e-12 Identities = 173/251 (69%), Gaps = 10/251 (4%) Strand=Plus/Minus Query 315 ATGGGTGCTAAGGTCCGTGCCCGAGAGG-AGAAGAATCCGGACTATCAGCTAAGGCCCCG 373 ||||||| |||| | | | ||||||| | || | || || | ||||||||||||| Sbjct 17164 ATGGGTGATAAGCTTCATTGTCGAGAGGGAAAATAGCCCAGATCACCAGCTAAGGCCCCT 17105 Query 374 AAATGACAGCTAAGTTA-AACTAACGAA----GTCTGATTGCTAAGACAGCTAGGATGTT 428 |||| || | ||| | |||| | || || | ||| |||| ||| |||| ||| Sbjct 17104 AAATAACCCATTAGTAATAACTGATAAATAAGGTGGGGGTGCAAAGATAGCCAGGAGGTT 17045 Query 429 GGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGG 488 | | ||||||| || | ||||||||||| |||| |||||||| | ||| | | | Sbjct 17044 TTCCTAGAAGCAGACACCC-TTTAAAGAGTGTGTAATAGCTCACTGATTGAGCACCCTTG 16986 Query 489 CGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATATG-ATC 547 ||| || || | ||| || || || |||||| ||||||| | ||||| ||| Sbjct 16985 CGTTGAAGATGAAAGGGGCTT-AGCGATCCGCCGAAGTTGTGGGAT-GTCAATATGCATC 16928 Query 548 GGTAGGGGAGC 558 ||||||||||| Sbjct 16927 GGTAGGGGAGC 16917 >seq9592 Length=175625 Score = 86.0 bits (94), Expect = 2e-14 Identities = 98/131 (75%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 57 CCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAA 116 ||||| ||||||||||| | | | | || ||| || |||| ||| |||||||| Sbjct 29537 CCATGACCAGGATGAAGCTTGGATGAAACTAAGCAGAGATC--AACCGACTGATGTTGAA 29480 Query 117 AAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGT 176 ||| || ||||||| ||||| ||||||||||| || | | ||| | || |||||||| Sbjct 29479 GAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCTAGAGCTAGCTGGT 29420 Query 177 TCTCTCCGAAA 187 |||| |||||| Sbjct 29419 TCTCCCCGAAA 29409 >seq876 Length=111527 Score = 78.8 bits (86), Expect = 3e-12 Identities = 131/187 (70%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | |||| || ||| ||| | | |||||||| | || ||||| | ||| Sbjct 44136 CGAGTCTTCATAGGGRGATTGTCACTGCTTATGGACCCGAACCTGGGTAATCTATCAATG 44077 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 | ||||||||| | | | | || | |||||| ||| ||| |||||||| ||| Sbjct 44076 ACTAGGATGAAGCTCGGATGAAACTAAGTAGAGGTCTAGACCGACTGATGTTGAAGAATC 44017 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||| | ||||| ||||||||||| || | | ||| || ||| |||||||| Sbjct 44016 AGCGGATGGGTTGTGGTTAGGGGTGAAATGC-ACTCGAACCCAGAGCTAGATGGTTCTC- 43959 Query 182 CCGAAAA 188 || |||| Sbjct 43958 CCTAAAA 43952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689305401344