Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq13872 378 2e-102 seq10464 224 3e-56 seq1861 100 9e-19 >seq13872 Length=27005 Score = 378 bits (418), Expect = 2e-102 Identities = 282/327 (86%), Gaps = 4/327 (1%) Strand=Plus/Minus Query 204 AAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGT 263 || |||||||||||||| || || || ||||||||||||||||||| ||||||||| Sbjct 25195 AAAGGTAGTGGTATTTCGTTTTGTCCAAA--GGCTCCCACTTATTCTACATCTCTCAAGT 25138 Query 264 CATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCG 323 ||||||| ||||||| |||||||||||||||||||| ||| ||||| || | |||||||| Sbjct 25137 CATTTCATAAAGTCGAACTAGAGTCAAGCTCAACAGAGTCATCTTTTCC-GTTGATTCCG 25079 Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTC 383 || | ||| ||||||| | ||||||||| | ||||||||||||| |||||||||||||| Sbjct 25078 CCGA-CCCATTCCCTTAGTTGTGGTTTCATTGGATAGTAGATAGGAACAGTGGGAATCTC 25020 Query 384 GTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 |||||| |||||||| | ||||||||||||||| ||||||||||| |||||||| | | Sbjct 25019 TTTAATCTATTCATGCCCATCACTAATTAGATGATGAGGCATTTGGTTACCTTAATATAT 24960 Query 444 TCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGA 503 |||||||||||||| || | |||| | |||||||||||||||||||||||||||||||| Sbjct 24959 TCATAGTTACTCCCACCATCTACCTACACTTGGTTGAATTTCTTCACTTTGACATTCAGA 24900 Query 504 GCACTGGGCAGAAATCACATTGCGTCA 530 |||| | |||||||||||||||||| Sbjct 24899 GCACCAAGGAGAAATCACATTGCGTCA 24873 >seq10464 Length=52742 Score = 224 bits (248), Expect = 3e-56 Identities = 213/267 (80%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | |||||||||| || ||||| Sbjct 31432 CTTTTGHTCCACATGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACATGTGTTATC 31373 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||| |||||||||||||||||||||||||||||||||||||| | || || |||| Sbjct 31372 TTTTAATAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGCCTTCCGCCTGGATT 31313 Query 127 GGCCC-GCGAAG---GACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTC 181 ||||| || || | |||| |||| ||| || | |||| || | ||||| || Sbjct 31312 GGCCCGGCAGAGCCAGGCCTTGGAGCCAAAAAGAGG--GACGAAGCCCCGCTTCCGACTC 31255 Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCC 241 || || ||||||||| ||| ||| |||||||||||||||||||||| | ||||||| Sbjct 31254 ATGGAATAAGTAAAATAACATTAAAAGTAGTGGTATTTCACTTGCGCCCGGA-GGCTCCC 31196 Query 242 ACTTATTCTACACCTCTCAAGTCATTT 268 |||||| |||||||||||||||||||| Sbjct 31195 ACTTATCCTACACCTCTCAAGTCATTT 31169 >seq1861 Length=6175 Score = 100 bits (110), Expect = 9e-19 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 465 ACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATT 524 |||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 689 ACCCATGCTTGTTTGAATTTCTTCACTTTGACATTTAGAGCACTGGGTAGAAATCACATT 630 Query 525 GCGTCAACAT 534 |||||| ||| Sbjct 629 GCGTCAGCAT 620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634914886528