Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq8150 122 3e-25 seq15003 109 2e-21 seq4262 89.7 2e-15 seq4627 84.2 7e-14 >seq8150 Length=87177 Score = 122 bits (134), Expect = 3e-25 Identities = 106/130 (82%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||| | |||| | | ||||||| | || |||||||||| ||||||||||| Sbjct 50376 ATTTCACTGAGCCTCTCTTCGAGACAGT-GTCCAGATCGTTACGCCTCTCGTGCAGGTCA 50434 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| | Sbjct 50435 AAACTTACCCGACAAGGAATTTYGCTACCTTAGGACCGTTATAGTTACGGTCGCCGTTCA 50494 Query 470 CTGGGGCTTC 479 | |||||||| Sbjct 50495 CCGGGGCTTC 50504 >seq15003 Length=136562 Score = 109 bits (120), Expect = 2e-21 Identities = 129/175 (74%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||| ||| |||| ||||||| | ||||||||||||||||||||||||| Sbjct 31354 TCGTTACGCCTTTCTTGCGGGTCAGAACTTAACTGACAAGGAATTTCGCTACCTTAGGAC 31413 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGG 505 ||||||||| |||||||| || |||||||| | || || | || || Sbjct 31414 CATTATAGTTATGCCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTT------CCCTGTCA 31467 Query 506 TGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | | |||| | ||| |||||| |||| ||||||||||||| || |||| Sbjct 31468 TCAGTTCACCAAATTCCTTGACCTTCTGGCACGGGGCAGGCGTCAGCCCCCATAC 31522 >seq4262 Length=99182 Score = 89.7 bits (98), Expect = 2e-15 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 381 GGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTT 440 || ||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 15740 GGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTT 15681 Query 441 AGGA 444 |||| Sbjct 15680 AGGA 15677 >seq4627 Length=97678 Score = 84.2 bits (92), Expect = 7e-14 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 385 GTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 443 |||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 89341 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGG 89399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702103169536