Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq16913 347 1e-90 seq10113 268 1e-66 seq12982 205 1e-47 seq666 176 5e-39 seq12572 114 1e-20 seq12273 96.9 4e-15 seq12503 84.2 2e-11 >seq16913 Length=117496 Score = 347 bits (384), Expect = 1e-90 Identities = 543/775 (70%), Gaps = 24/775 (3%) Strand=Plus/Minus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 95221 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 95162 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCCC 159922 ||||||| || | || | |||||| | || || ||||||||||||||||||| Sbjct 95161 ATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATCGCTGCTCCT 95102 Query 159923 CCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAAC 159982 || || || || ||||| || ||||| || || || |||| | | || | ||||| Sbjct 95101 CCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATAGAAACAAT 95042 Query 159983 ATCATCTCTGGTGCAGTTGTTCCCTC-----------TTCCAAC-------GCAATTGGT 160024 || || |||||||| || |||| | |||| || ||||| || Sbjct 95041 ATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTGGCAATCGGA 94982 Query 160025 CTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGT 160084 | || || || || |||||| || | ||||| | || || ||| | || || ||||| Sbjct 94981 TTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAAAATTGTGGT 94922 Query 160085 CCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAG 160144 |||| | || | || | | || | | || | | ||||||||||||||| Sbjct 94921 CCTTCTGAGCTAATTGTTCTATATTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 94862 Query 160145 TGGG-AACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCC 160203 |||| |||| || |||||| |||| ||| || ||||| | ||||||| || ||||| Sbjct 94861 TGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGATTGCTATTGCATATTCAGCTCC 94802 Query 160204 AGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGA 160263 | || |||||| |||||| ||| | || ||| | | ||||| || ||||||||| Sbjct 94801 TTT-GCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCGA 94743 Query 160264 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACA 160323 || | ||||| | || || ||||||| ||| |||| ||| |||||||||| | ||| || Sbjct 94742 TGGTGTGCCTTTAGGAATATCTGGTA-TTTCAACTTTATAATTGTATTCCAGGTAGAGCA 94684 Query 160324 CAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCT 160383 ||| |||||||||||| | || |||||| | ||| | ||||| |||||||| || ||| Sbjct 94683 CAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCT-- 94626 Query 160384 GTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAAC 160443 ||| | ||||||||| || ||| || |||||| | |||| || || || |||| Sbjct 94625 -TTCAGCGTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGGGAAACCACTGAAAA 94567 Query 160444 TGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGC 160503 |||||| || | |||||||| || |||||||| |||||||| | || ||||| || Sbjct 94566 TGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACATGTAATATCGTGGC 94507 Query 160504 AGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCA 160558 || || || || || ||||| || ||||| |||||||| | || ||||||||| Sbjct 94506 TGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTCAACAACTCA 94452 >seq10113 Length=56568 Score = 268 bits (296), Expect = 1e-66 Identities = 495/713 (69%), Gaps = 11/713 (2%) Strand=Plus/Minus Query 161527 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 161586 ||||||| | | | | || | ||| |||||||| | |||||||| || | || ||| Sbjct 48557 GACGACTTGTTACGAAGGGACCATTTTGTTTTTGTATGATGGTCTGGCCTATTGCTCTTT 48498 Query 161587 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGG 161646 || ||||||| ||||| | || |||||| |||| || || ||||| | || ||| Sbjct 48497 CCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTACAGGRACTACTTTTGTAACTTCTTGG 48438 Query 161647 TATACCCATGGACTCGCTAGTTCCTATCTTG-AGGGTGCAAATTTTCTT-ACAGCGGCAG 161704 |||||||||||| | | |||||||||| | | ||| ||||| |||||| |||||||| | Sbjct 48437 TATACCCATGGATTGGATAGTTCCTATTTGGAAGGATGCAA--TTTCTTAACAGCGGCGG 48380 Query 161705 TTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTC 161764 ||| |||||| ||| | | | | || ||| | | || || ||||| | || | | Sbjct 48379 TTATCACTCCTGCTAATAGTTTAGCACACTCTTTGTTACTACTATGGGGCCTGGAAGAAC 48320 Query 161765 AAGGGGATTTCGTCAGGTGGAT-CCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 161823 | |||||||| | || ||| ||| | || || || |||| |||||| || ||||| Sbjct 48319 AGGGGGATTT-TACTCGTTGATGTCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCAT 48261 Query 161824 GGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGCTC-GTCTTATCGG 161882 |||||||| || || || |||||| | ||||| ||||||| ||||| |||| || Sbjct 48260 GGGGCTTTTATGCTAATAGGTTTCATGTTACGTCAATTTGAACATGCTCAGTCTGTTCAA 48201 Query 161883 TATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTG-TTTTTGTCAGCGTCT 161941 | | || ||||| ||||| ||| | |||||| |||| | || ||||||| || | Sbjct 48200 T-TGCGGCCTTATAATGCAATTTCATTCTCTAGTCCAACCATTGTTTTTTGTTTTTGTAT 48142 Query 161942 TTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCG 162001 | || | ||||| ||||||| || | |||||| | || ||||| | | | Sbjct 48141 TCCTTGTTTATCCAATGGGACAATCTGGTTAGTTCTTTGTGCTGAGTTTTGGCATAGAAG 48082 Query 162002 CTAT-TTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTC 162060 ||| ||||| ||| | |||||| | ||||| || | ||||||||| | || || || Sbjct 48081 TTATATTTCA-ATTCATCCTTTTCTTCCAAGGATTTCCTAATTGGACGTTAAACCCATTT 48023 Query 162061 CACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTG 162120 || |||||||| || || || | || || | ||| |||| | |||| || || | Sbjct 48022 CATATGATGGGGGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCTCTATCCATGGGGCT 47963 Query 162121 ACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGAC 162180 || | |||||||| || | | |||||| ||| |||||||| ||| | |||| | || Sbjct 47962 ACCATAGAAAACACTCTATTCAAAGATGATGATGGTGCAAATACCTTCTATGCTTGTAAC 47903 Query 162181 TCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTC 162233 | || |||| || || ||||| || ||| | ||| | ||| | || ||||| Sbjct 47902 GCAACTCAAGCTGAAGAAACTTATTCAATGATCACTACTAACAGCTTTTGGTC 47850 Score = 163 bits (180), Expect = 3e-35 Identities = 209/284 (74%), Gaps = 3/284 (1%) Strand=Plus/Minus Query 162229 TGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTC 162288 ||||| || || || ||| || ||||| ||||| |||||||| |||||||||||||| Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 162289 TTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTTAAT 162348 | || | || || || | | || | | |||| || | ||| || ||||| || Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 162349 CTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAA 162408 || |||| || || ||| | || ||| | || |||||||| || |||||||||||||| Sbjct 890 CTATGTGCCTATGA-TTTCT-TCCCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 162409 ACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTT 162468 || ||||||||||| |||| || || ||||| ||| ||| ||| ||| ||||| | Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 162469 GATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCC 162512 ||||| || ||||| || || ||||||||||||| ||||| || Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACC 729 >seq12982 Length=32303 Score = 205 bits (226), Expect = 1e-47 Identities = 342/492 (70%), Gaps = 2/492 (0%) Strand=Plus/Plus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 |||||| | | | ||||| ||| | |||| || || |||| ||||| || || || Sbjct 473 TTCTGCAACTAGATAACTAGCACCGAACACCGTCTTTACATCGGATGGTTTGGTGTTTTG 532 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATC-TGCTTCATCGTCGCCTTCATCGCTGCTCC 159921 |||||||| || | ||| | |||||| | | ||| || || |||||||||||||||| Sbjct 533 ATGATCCCTACCTTATTGACCGCAACTTCCGTACTT-ATTATCACCTTCATCGCTGCTCC 591 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 || || || || ||||| || ||||| || || ||||||| | || || || |||| Sbjct 592 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTAATTTATGGAAACAG 651 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 || ||||||||||| || |||| ||| | || || | || || || || || Sbjct 652 TATTATCTCTGGTGCTATTATTCCTACTTATGTGACGATCGGATTGCATTTTTACCCAAT 711 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 |||| |||| ||||| | || || ||| | || || || ||||||| | || | || Sbjct 712 TTGGAAAGCTGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGACCTAATTGT 771 Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161 | || ||| | | || | | ||||||| |||||| |||||||| || || Sbjct 772 TCTACATTTCTTACTTGGTGTAGCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCCA 831 Query 160162 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGC 160221 ||| |||||||| | ||||| ||||||||| || ||||| || || | |||| |||| Sbjct 832 TCTGGGTATGCGCCTTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGC 891 Query 160222 TGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160281 | | ||| | | ||||| | ||||| | ||| || |||| ||||||| | || || Sbjct 892 TATTTTCTTGATTTACCCTATTGGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAAT 951 Query 160282 CTCTGGTACTTT 160293 ||||||||||| Sbjct 952 ATCTGGTACTTT 963 >seq666 Length=229199 Score = 176 bits (194), Expect = 5e-39 Identities = 193/257 (75%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 162172 GCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGG 162231 |||||| || || |||| || || ||||| || ||||||||||| | || || ||| Sbjct 152537 GCTTTTAACCTAACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGG 152478 Query 162232 TCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTC 162291 || || ||||| ||| |||||||| ||||| | ||||| |||||||||||| | || Sbjct 152477 TCTCAAATCTTTGGTGTTGCTTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTT 152418 Query 162292 GTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTTAATCTT 162351 || ||||||| ||| | |||| ||| |||| || | |||| || ||| | || || Sbjct 152417 GTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTA 152358 Query 162352 CGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACC 162411 ||||||| ||||| | || ||||| || | ||||||||| |||||||||||||| || Sbjct 152357 CGTGCTTGTGACTTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACT 152298 Query 162412 TTCTACACCAAGAATAT 162428 ||||| |||| ||||| Sbjct 152297 TTCTATGCCAAAAATAT 152281 >seq12572 Length=34890 Score = 114 bits (126), Expect = 1e-20 Identities = 189/270 (70%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 161803 TGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTT 161862 |||| |||||| || ||||| |||||||| || || ||| || ||| | ||||| ||| Sbjct 26961 TGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATTTTTTTTATGTTACGTCAATTT 26902 Query 161863 GAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTAT 161921 ||||||||||| ||| || | | | || ||||| ||| | ||||||||||| | Sbjct 26901 GAACTTGCTCGGTCTGTTCAAT-TGTTTTTTTTTAATGCAATTTCATTCTCTGGTCCGTT 26843 Query 161922 TGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGC 161981 ||||||||||| | || || || ||||| |||||||| || |||||||| | Sbjct 26842 CGCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGT 26783 Query 161982 GCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAA 162041 | ||||| || || ||||| || | ||| | |||||| | ||| || || Sbjct 26782 TTTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCTTTTTTTTTCATAA 26723 Query 162042 TTGGACGCTTAATCCGTTCCACATGATGGG 162071 |||||| | || || || || |||||||| Sbjct 26722 TTGGACATTAAACCCATTTCATATGATGGG 26693 >seq12273 Length=37008 Score = 96.9 bits (106), Expect = 4e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 160562 TCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGT 160621 ||| | ||||||||| | |||||||||||||| || || |||||||||||||| | ||| Sbjct 29534 TCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGT 29475 Query 160622 GTTTCTACCATGGCATTCAATCTCAATGGTTTC 160654 || ||| ||||||||||| || ||||||||| Sbjct 29474 ATTAGTACTATGGCATTCAACCTAAATGGTTTC 29442 >seq12503 Length=143431 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/151 (73%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 161527 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 161586 ||||||||| | | | || |||||||||||| | || | ||| || || | || ||| Sbjct 88091 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATTGTCCGGCCTATTGCTCTTT 88150 Query 161587 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGG 161646 || ||||||| | ||| | || |||||| ||| || || ||||| || ||| Sbjct 88151 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTATAGGGACTACTTTTATAACTTCTTGG 88210 Query 161647 TATACCCATGGACTCGCTAGTTCCT-ATCTT 161676 |||||||||||| | |||||||||| ||||| Sbjct 88211 TATACCCATGGATTGGCTAGTTCCTAATCTT 88241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551255827600800