Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq16913 302 6e-77 seq12982 172 7e-38 seq10113 159 4e-34 seq666 159 4e-34 seq12572 129 7e-25 seq8160 91.5 2e-13 >seq16913 Length=117496 Score = 302 bits (334), Expect = 6e-77 Identities = 522/751 (70%), Gaps = 32/751 (4%) Strand=Plus/Minus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCGCTGCAACC 188937 |||||||| || |||| ||||||||||| ||||||||| ||| | | | ||||| Sbjct 95194 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCGTACCTTATTAACCGCAACT 95135 Query 188938 ATCTGCTTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGAA 188997 | || || ||||||| ||||||| || || ||||| |||||||| || || || Sbjct 95134 TCCATATTTATTATCGCCTTCATCGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAG 95075 Query 188998 CCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCA 189057 || || || |||| | | ||| ||||||| || || ||||||||| || | ||| || Sbjct 95074 CCTGTTTCTAGTTCTTTACTTTATAGAAACAATATTATATCTGGTGCTATTATTCCTGCA 95015 Query 189058 -----------TCCAAC-------GCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCC 189099 ||| || ||||| || | || || ||||| || ||| || | Sbjct 95014 GAAACTATTATTCCTACTTCTGTGGCAATCGGATTGCATTTTTACCCAATTTGGAAAACT 94955 Query 189100 GCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTC 189159 || || | ||||| ||| | || || ||||||||| | || | || | | || Sbjct 94954 GCATCTGTTGATGAATGGTTATAAAATTGTGGTCCTTCTGAGCTAATTGTTCTATATTTT 94895 Query 189160 CTCATCGGCATCTACGCCT---ACATGGGTCGTGAGTGGG-AACTCTCTTACCGTCTCGG 189215 | | || | || || | | |||||||||||||||| |||| || |||||| || Sbjct 94894 TTACTTGG--TGTA-GCTTGTTATATGGGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGG 94838 Query 189216 TATGCGTCCTTGGATCTGC-ATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCT 189274 || ||| |||||||| ||| ||||| || || || ||| ||||||| || || || | Sbjct 94837 TACGCGCCCTTGGAT-TGCTATTGCATATTCAGCTCCT-TTGCAGCTGCTAGTGCTGTTT 94780 Query 189275 TTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTG 189334 | |||| || || |||||||||| |||||| || | |||| || || || || Sbjct 94779 TCTTGGTTTACTCTATTGGTCAAGGGAGTTTCTCCGATGGTGTGCCTTTAGGAATATCTG 94720 Query 189335 GAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCC 189394 | | ||||||| || |||| ||||| | ||||||||||||||| ||||| | || | Sbjct 94719 GTAT-TTCAACTTTATAATTGTATTCCAGGTAGAGCACAACATCCTTATGCATTCATTTC 94661 Query 189395 ACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCAC 189454 ||||| | || | || ||||| ||||| ||||| ||| || ||||||||||| Sbjct 94660 ACATGTTAGGTATAGCTGGTGTATTCGGCGGTTCT---TTCAGCGTTATGCATGGTTCCT 94604 Query 189455 TCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACA 189514 | | |||||| || | | ||||||||||||| ||||| || | ||||||| Sbjct 94603 TGGCAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACA 94544 Query 189515 AGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTC 189574 | ||||| ||||||||||| || | || ||||| |||||||| || ||||| ||||| Sbjct 94543 AATTTGGTCAAGAAGAAGAGACATGTAATATCGTGGCTGCTCACGGTTATTTTGGTCGAT 94484 Query 189575 TTATCTTCCAATATGCATCGTTCAACAACTC 189605 | ||||| |||||||| | ||||||||||| Sbjct 94483 TAATCTTTCAATATGCTACTTTCAACAACTC 94453 >seq12982 Length=32303 Score = 172 bits (190), Expect = 7e-38 Identities = 319/458 (70%), Gaps = 14/458 (3%) Strand=Plus/Plus Query 188879 ACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-CTGCAACC 188937 ||||||| || |||| ||||| ||||| ||||||||||||| ||| | | | ||||| Sbjct 501 ACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAACT 559 Query 188938 ATC-TGCTTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGA 188996 | | ||| || || |||| ||||||| || || ||||| |||||||| || || || Sbjct 560 TCCGTACTT-ATTATCACCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 618 Query 188997 ACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCT-- 189054 || || ||||||| | || |||||||||| || |||||||||||| || | ||| Sbjct 619 GCCTGTTTCTGGTTCTTTAATTTATGGAAACAGTATTATCTCTGGTGCTATTATTCCTAC 678 Query 189055 TCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAG 189114 | || ||| || || | || || ||||| || ||| |||| || || | ||||| Sbjct 679 TTATGTGACG--ATCGGATTGCATTTTTACCCAATTTGGAAAGCTGCATCCGTTGATGAA 736 Query 189115 TGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTAC 189174 ||| | ||||| || ||||||| | || | || | || ||| | | || | || Sbjct 737 TGGTTATACAATGGCGGTCCTTATGACCTAATTGTTCTACATTTCTTACTTGG--TGTA- 793 Query 189175 GC---CTACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATC 189231 || || |||| |||||| |||||||| || || ||| |||||||| | |||||| Sbjct 794 GCTTGTTATATGGATCGTGACTGGGAACTTAGTTTCCATCTGGGTATGCGCCTTTGGATT 853 Query 189232 TGCATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTT 189291 |||| || || || |||||||||| || | || | || || | || ||| || Sbjct 854 GTTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTATTTTCTTGATTTACCCTATT 913 Query 189292 GGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTAT 189329 ||||||| ||| ||||| | ||||| || || || Sbjct 914 GGTCAAGAAAGTTTTTCTGATGGTATGCCTTTAGGAAT 951 >seq10113 Length=56568 Score = 159 bits (176), Expect = 4e-34 Identities = 216/297 (73%), Gaps = 3/297 (1%) Strand=Plus/Minus Query 190701 TGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTC 190760 ||||| ||||| ||||||||| | || ||||| | ||||| |||||||||||||| Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 190761 TTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAAC 190820 |||| | ||| || || | | || || | || || | ||| || ||||| ||| Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 190821 CTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAG 190880 || |||| ||||| ||| | ||||| | ||| | |||||||||||||| || || ||| Sbjct 890 CTATGTGCCTATGA-TTTCT-TCCCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 190881 ACTTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTT 190940 ||||| ||||| ||| |||| ||||| ||||| ||| ||| | | ||| ||||| || Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 190941 GATCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCT 190997 ||||| || ||||| ||| || |||| || || || || | ||| | || | |||| Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCATGTGGAATCGCT 716 >seq666 Length=229199 Score = 159 bits (176), Expect = 4e-34 Identities = 192/260 (74%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 190656 ACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTT 190715 || |||| ||||| || ||||| ||||| ||||| | || || ||||||||||||||| Sbjct 152525 ACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTT 152466 Query 190716 GGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATG 190775 |||||||| || ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 152465 GGTGTTGCTTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACC 152406 Query 190776 GGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 190835 ||| | |||| | | || || | |||| || ||| | ||||| ||||||| |||| Sbjct 152405 GGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGAC 152346 Query 190836 TTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAAAA 190895 || | ||||| || ||| ||||| |||||||| || || |||||||| || | ||| Sbjct 152345 TTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAAA 152286 Query 190896 AATATACTTTTGAATGAAGG 190915 ||||| |||| || |||| Sbjct 152285 AATAT--TTTTTAAACAAGG 152268 >seq12572 Length=34890 Score = 129 bits (142), Expect = 7e-25 Identities = 192/270 (71%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 190275 TGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTT 190334 ||| ||||||| || ||||| |||||||| || |||||| || ||| | ||||| ||| Sbjct 26961 TGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTAATTTTTTTTATGTTACGTCAATTT 26902 Query 190335 GAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTAT 190393 ||||| || || ||| || | | | || ||||| ||| | ||||||||||| | Sbjct 26901 GAACTTGCTCGGTCTGTTCAAT-TGTTTTTTTTTAATGCAATTTCATTCTCTGGTCCGTT 26843 Query 190394 CGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGC 190453 ||||||||||||| | || || || || || ||||| ||||| |||||||||| | Sbjct 26842 CGCTGTTTTTGTTTTTTTTTTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGT 26783 Query 190454 GCCATCCTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAA 190513 | || || || ||||| || || || ||| |||| ||||| || ||||| Sbjct 26782 TTTTTTTTTTGGCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCTTTTTTTTTCATAA 26723 Query 190514 CTGGACGCTGAACCCCTTCCACATGATGGG 190543 ||||| | ||||| || || |||||||| Sbjct 26722 TTGGACATTAAACCCATTTCATATGATGGG 26693 >seq8160 Length=957 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 189480 AACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTA 189539 || || ||||| ||||| || | |||||||| |||| |||||||||| || || Sbjct 319 AAACAATGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGATTAAGAAGAAGAGACCTA 378 Query 189540 CAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAA 189599 || || || |||||||||| ||||| ||||| | |||||||||||| | ||||| Sbjct 379 TAATATTGTGGCTGCTCATGATTATTTTGGTCGATTAATCTTCCAATATCCTAGTTTCAA 438 Query 189600 CAACTCCCGTTCACTTCACT 189619 |||||| ||||| | |||| Sbjct 439 CAACTCTCGTTCTTTACACT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633941802264000