Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dichanthelium_20oligosanthes_20[genbank_20GCA_5F001633215.2_202016- 09-29] 17,436 sequences; 589,166,415 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq16913 416 3e-111 seq12982 241 1e-58 seq10113 233 2e-56 seq666 158 1e-33 seq12572 118 1e-21 seq8160 109 6e-19 seq11770 87.8 2e-12 >seq16913 Length=117496 Score = 416 bits (460), Expect = 3e-111 Identities = 570/788 (72%), Gaps = 34/788 (4%) Strand=Plus/Minus Query 160563 TGGGAACAATTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTC 160622 |||| || |||||| | ||| ||||| || | || ||||||||| |||| |||||| Sbjct 95230 TGGGGTCACTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTC 95171 Query 160623 GGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTTATTACTGCGTTCGTT 160682 ||||| ||||||||| || | || | ||||| | ||||||| || ||| | Sbjct 95170 GGTGTTTTGATGATCCGTACCTTATTAACCGCAACTTCCATATTTATTATCGCCTTCATC 95111 Query 160683 GCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTAT 160742 |||||||| || || || || || ||||| ||||| || ||| || |||| | | ||| Sbjct 95110 GCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTAT 95051 Query 160743 GGAAACAACATCATCTCTGGTGCAGTTGTTCCTTC-----------TTCCAAC------- 160784 ||||||| || || |||||||| || ||||| | |||| || Sbjct 95050 AGAAACAATATTATATCTGGTGCTATTATTCCTGCAGAAACTATTATTCCTACTTCTGTG 94991 Query 160785 GCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTAC 160844 ||||| || | || || ||||| |||||| || |||||||| ||||||||||| | || Sbjct 94990 GCAATCGGATTGCATTTTTACCCAATTTGGAAAACTGCATCTGTTGATGAATGGTTATAA 94931 Query 160845 AATGGTGGTCCTT---ACCAACTGGTCGTATTTCACTTCCTGATCG-GCATCTTCTGCTA 160900 ||| ||||||||| | | | | || ||| | || || | | | | ||| | || Sbjct 94930 AATTGTGGTCCTTCTGAGCTAATTGTTCTATATTTTTTACT--TGGTGTAGCTTGT--TA 94875 Query 160901 CATGGGTCGCGAGTGGG-AACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGCG-TT 160958 |||||||| ||||||| ||||| | ||| || || | |||||| ||||| ||| || Sbjct 94874 TATGGGTCGTGAGTGGGGAACTTAGTTTCCGTCTGGGTACGCGCCCTTGGAT-TGCTATT 94816 Query 160959 GCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAA 161018 |||||||| || ||| |||| ||||| ||||| || ||| | || || || | |||||| Sbjct 94815 GCATATTCAGCTCCT-TTGCAGCTGCTAGTGCTGTTTTCTTGGTTTACTCTATTGGTCAA 94757 Query 161019 GGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTC 161078 || |||||| |||||| |||| | || || ||||||| |||||||| || |||| Sbjct 94756 GGGAGTTTCTCCGATGGTGTGCCTTTAGGAATATCTGGTAT-TTCAACTTTATAATTGTA 94698 Query 161079 TTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTC 161138 ||||||| ||| ||||||||||| ||||| | || |||||||| ||| | |||||||| Sbjct 94697 TTCCAGGTAGAGCACAACATCCTTATGCATTCATTTCACATGTTAGGTATAGCTGGTGTA 94638 Query 161139 TTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGT 161198 ||||| |||||| ||| || ||||||||||| ||| || ||| || | | Sbjct 94637 TTCGGCGGTTCT---TTCAGCGTTATGCATGGTTCCTTGGCAACCTCTAGTTTGATCAGG 94581 Query 161199 GAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACC 161258 ||||||||||| || ||||| || | |||||||| |||||||||||||||||||| Sbjct 94580 GAAACCACTGAAAATGAGTCTGCTAATGAAGGTTACAAATTTGGTCAAGAAGAAGAGACA 94521 Query 161259 TACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTC 161318 | || ||||| |||||||| ||||| || ||||| | ||||| ||||| ||| | ||| Sbjct 94520 TGTAATATCGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTTCAATATGCTACTTTC 94461 Query 161319 AACAACTC 161326 |||||||| Sbjct 94460 AACAACTC 94453 >seq12982 Length=32303 Score = 241 bits (266), Expect = 1e-58 Identities = 330/461 (72%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 160602 CGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTC 160661 ||||||||| |||| ||||| ||||| |||||||||| || | ||| | ||||| | Sbjct 503 CGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCC 562 Query 160662 TGCTTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCC 160721 |||||| | ||| | |||||||| || || || || || ||||| ||||| || Sbjct 563 GTACTTATTATCACCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCT 622 Query 160722 GTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCC 160781 ||| ||||||| | || |||||||||| || ||||||||||| || ||||| ||| Sbjct 623 GTTTCTGGTTCTTTAATTTATGGAAACAGTATTATCTCTGGTGCTATTATTCCTACTTAT 682 Query 160782 AACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTC 160841 | || || | || || ||||| |||||| |||||||||| ||||||||||| | Sbjct 683 GTGACGATCGGATTGCATTTTTACCCAATTTGGAAAGCTGCATCCGTTGATGAATGGTTA 742 Query 160842 TACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTAC 160901 |||||||| |||||||| | || | || | || ||| | | || | || || Sbjct 743 TACAATGGCGGTCCTTATGACCTAATTGTTCTACATTTCTTACTTGGTGTAGCTTGTTAT 802 Query 160902 ATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGCGTTGCA 160961 |||| ||| || ||||||||| | || || || ||||||| ||||| |||||| Sbjct 803 ATGGATCGTGACTGGGAACTTAGTTTCCATCTGGGTATGCGCCTTTGGATTGTTGTTGCA 862 Query 160962 TATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGT 161021 ||||| || |||||||| | ||| | ||| | ||| | | || ||| | ||||||| Sbjct 863 TATTCAGCTCCTGTTGCAGTTGCTACTGCTATTTTCTTGATTTACCCTATTGGTCAAGAA 922 Query 161022 TCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTT 161062 ||| |||||||||||||| | || || |||||||| || Sbjct 923 AGTTTTTCTGATGGTATGCCTTTAGGAATATCTGGTACTTT 963 >seq10113 Length=56568 Score = 233 bits (258), Expect = 2e-56 Identities = 486/716 (68%), Gaps = 11/716 (2%) Strand=Plus/Minus Query 163897 TGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTT 163956 ||||||||| | | | | || | ||||| ||||| | |||||||| || | || | Sbjct 48559 TGGACGACTTGTTACGAAGGGACCATTTTGTTTTTGTATGATGGTCTGGCCTATTGCTCT 48500 Query 163957 TTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTT 164016 |||| ||||||| |||| | || || ||| |||| || || || ||||| || || Sbjct 48499 TTCCTTGTGCTTATTTTGCTTTAGGGGGTTGGTTTACAGGRACTACTTTTGTAACTTCTT 48440 Query 164017 GGTACACCCACGGTCTCGCGTCTAGTTACC--TTG--AGGGTGCTAATTTCCTTACAGCG 164072 |||| ||||| || | | ||||| | ||| ||| ||| |||||| | |||||| Sbjct 48439 GGTATACCCATGGATTGGA---TAGTTCCTATTTGGAAGGATGC-AATTTCTTAACAGCG 48384 Query 164073 GCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAG 164132 || || || |||||| || | | | || ||| | | ||||| ||||| | || Sbjct 48383 GCGGTTATCACTCCTGCTAATAGTTTAGCACACTCTTTGTTACTACTATGGGGCCTGGAA 48324 Query 164133 TCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTC 164192 |||||||| || | | | || || ||| | || || || ||| ||||||| || || Sbjct 48323 GAACAGGGGGATTTTACTCGTTGATGTCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTC 48264 Query 164193 CACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGCAC-GTCTTGT 164251 || || |||| || || ||||||||| | || || |||||| ||| | |||| | Sbjct 48263 CATGGGGCTTTTATGCTAATAGGTTTCATGTTACGTCAATTTGAACATGCTCAGTCTGTT 48204 Query 164252 AGGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTT-GTCAGCG 164310 | | || || || ||||| ||| | |||||| |||| | ||| ||| || | Sbjct 48203 CAAT-TGCGGCCTTATAATGCAATTTCATTCTCTAGTCCAACCATTGTTTTTTGTTTTTG 48145 Query 164311 TTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCG 164370 | |||||| | || || | || |||||| ||| |||||||| | ||||| | | Sbjct 48144 TATTCCTTGTTTATCCAATGGGACAATCTGGTTAGTTCTTTGTGCTGAGTTTTGGCATAG 48085 Query 164371 CGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCT 164430 | || || |||| || | ||| ||||||| || | ||| ||||| | ||||| | Sbjct 48084 AAGTTATATTTCAATTCATCCTTTTCTTCCAAGGATTTCCTAATTGGACGTTAAACCCAT 48025 Query 164431 TCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTG 164490 | ||||||||||| ||||| || | | || | ||||| || || |||| ||||| | Sbjct 48024 TTCATATGATGGGGGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCTCTATCCATGGGG 47965 Query 164491 CTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCG 164550 ||||| |||| || ||| | || |||||| ||| ||||||| ||| | || | Sbjct 47964 CTACCATAGAAAACACTCTATTCAAAGATGATGATGGTGCAAATACCTTCTATGCTTGTA 47905 Query 164551 AGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCT 164606 | | ||||||| ||||| ||||| || ||| ||||| | ||| |||| |||||| Sbjct 47904 ACGCAACTCAAGCTGAAGAAACTTATTCAATGATCACTACTAACAGCTTTTGGTCT 47849 Score = 123 bits (136), Expect = 3e-23 Identities = 199/284 (70%), Gaps = 3/284 (1%) Strand=Plus/Minus Query 164601 TGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTC 164660 ||||| || || |||||| || |||| |||||| |||||||| || ||||||||||| Sbjct 1009 TGGTCCCAAATATTTGGTGTTTCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTA 950 Query 164661 TTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAAT 164720 |||| | ||| || | | | || | | ||||||| | | | || || || || Sbjct 949 CTTGTACTTGTAATCAGTTTATAGATGACTGCTATTGGC-TAGTTGCCCTGGCTCTGAAC 891 Query 164721 CTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAG 164780 || |||| |||||||| | | ||| | || | |||||||| ||||||||||||||| Sbjct 890 CTATGTGCCTATGATTTCTT--CCCAGAAAATCCGTGCAGCAGAAGATCCTGAATTTGAG 833 Query 164781 ACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTA 164840 || ||||| || || | || || | ||||| || | | ||| |||||||| | Sbjct 832 ACTTTCTACACCAAATATATTCTTTTAAATGAGGGTATTCATGCGTGGATGGCAGCTCAG 773 Query 164841 GACCAGCCACACGAATCGTTTGTATTTCCAGAGGAAGTTCTTCC 164884 || ||||| || ||| || |||| || ||||| ||||| || Sbjct 772 GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACC 729 >seq666 Length=229199 Score = 158 bits (174), Expect = 1e-33 Identities = 182/245 (74%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 164556 ACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTT 164615 ||||||| ||||| ||||| || ||||| ||||| | ||||| |||||||| || ||| Sbjct 152525 ACTCAAGCTGAAGAAACTTATTCAATGGTTACTGCTTATCGCTTTTGGTCTCAAATCTTT 152466 Query 164616 GGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATG 164675 ||| ||||||| |||||| | ||||| || ||||||||| | ||||| || |||| Sbjct 152465 GGTGTTGCTTTTCTCAATAAAGGCTGGTTACATTTCTTTATGTTATTTGTACCCGTCACC 152406 Query 164676 GGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGAT 164735 || | |||| ||| ||||||| | | || || || | || || ||||||| ||| Sbjct 152405 GGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTTTGAACCTACGTGCTTGTGAC 152346 Query 164736 TTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAG 164795 || | || ||||| || ||||| || ||||||||||||||||| |||||| | || Sbjct 152345 TTCATTTCCCAGGAAATCCATGCAGCGGAAGATCCTGAATTTGAGACTTTCTATGCCAAA 152286 Query 164796 AACAT 164800 || || Sbjct 152285 AATAT 152281 >seq12572 Length=34890 Score = 118 bits (130), Expect = 1e-21 Identities = 211/308 (69%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 164136 CAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCAC 164195 |||||||| || | | | ||||| ||| || | ||| ||||||| || |||| Sbjct 27000 CAGGGGGATTTTACTCGTTGGTGTCAATTTTTTTTTTTGTGGACTTTTGTCGCTCTCCAT 26941 Query 164196 GGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGT 164255 || |||| || || || ||| ||| | || || |||||| |||| || ||| Sbjct 26940 GGGGCTTTTGCACTAATTTTTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAA 26881 Query 164256 ATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTC 164315 | | | ||||| ||| | |||||||||||| | ||||| ||||| ||||| Sbjct 26880 TTGTTTTTTTTTAATGCAATTTCATTCTCTGGTCCGTTCGCTGTTTTTGTTTTTTTTTTC 26821 Query 164316 CTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCG 164375 ||||| || || || || |||||| |||||||||||| | ||||| || || || Sbjct 26820 CTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGTTTTTTTTTTTGGCGTAGCAGCT 26761 Query 164376 ATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCAT 164435 || || ||||| || | ||| || ||| ||||| |||||| | ||||| || ||| Sbjct 26760 ATATTTCGATTCATCCTTTTCTTCTTTTTTTTTCATAATTGGACATTAAACCCATTTCAT 26701 Query 164436 ATGATGGG 164443 |||||||| Sbjct 26700 ATGATGGG 26693 >seq8160 Length=957 Score = 109 bits (120), Expect = 6e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 161201 AACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTA 161260 || || ||| || ||||| || | |||||||| |||| | |||||||||||||||| Sbjct 319 AAACAATGAAAATGAGTCTGCTAATGAGGGTTACAAATTTGATTAAGAAGAAGAGACCTA 378 Query 161261 CAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAA 161320 || || || |||||||||| ||| || ||||| | ||||||||||| || ||||| Sbjct 379 TAATATTGTGGCTGCTCATGATTATTTTGGTCGATTAATCTTCCAATATCCTAGTTTCAA 438 Query 161321 CAACTCCCGTTCGTTGCACT 161340 |||||| ||||| || |||| Sbjct 439 CAACTCTCGTTCTTTACACT 458 >seq11770 Length=261943 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/218 (69%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 160609 ACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTTA 160668 || |||| ||||| |||| |||||||| | || | ||| | |||| || |||| Sbjct 78368 ACATCGGATGGTTTAGTGTTTTGATGATCTTACCT-TATTGACCACAACTTTCGTATTTA 78426 Query 160669 TTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTG 160728 ||| || ||| | |||||||| || || || || || ||||| ||||| || ||| Sbjct 78427 TTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAGTTTGTCTCTG 78486 Query 160729 GTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAA 160788 |||| | | ||| ||||||| || |||||| ||| || || || |||| | | Sbjct 78487 GTTCTTTACTTTATAGAAACAATATTATCTCTATTGCTATTATTTCTACTTCTGCAGGGA 78546 Query 160789 TTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCT 160826 ||| | || || |||| ||||| |||||||||||| Sbjct 78547 TTGAATTGCATTTTCACCCAATTTGAGAAGCTGCATCT 78584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559206094462400