Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dioscorea_20rotundata_20[genbank_20GCA_5F002240015.1_202017-07-28] 21 sequences; 456,674,974 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq8 378 1e-102 seq6 347 2e-93 seq3 77.0 5e-12 >seq8 Length=28021425 Score = 378 bits (418), Expect = 1e-102 Identities = 232/245 (95%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 18885529 GTACAAAGGGTAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 18885472 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 18885471 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCAYGATGAAATTTTACAAGATT 18885412 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| ||||||||||||||||||| ||||||| ||||||||| Sbjct 18885411 ACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATYAGTGTAGYGCGCGTGCG 18885352 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 18885351 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTTCGTGGCCTAAAC 18885292 Query 240 GGCCA 244 ||||| Sbjct 18885291 GGCCA 18885287 >seq6 Length=32866201 Score = 347 bits (384), Expect = 2e-93 Identities = 233/257 (91%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||| |||||||| ||||| |||||||||| ||||||||||||| | Sbjct 3390773 GTACAAAAAGCAGGGACATAGTCAACATGAGCT-GATGACTCGCKCTTACTAGGAATT-C 3390830 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||| ||||||||||||||||||||| |||||||||||||| |||||||||| | |||||| Sbjct 3390831 CTCKTTGAAGACCAACAATTGCAATAATCTATCCCCATCATGATGAAATTTTACAAGATT 3390890 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 3390891 ACCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTACG 3390950 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 3390951 GCCCAGAACATCTAAGGACATCACAGACCTGTTAATGCCTCAAACTTCCGTGGCCTAAAC 3391010 Query 240 GGCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 3391011 GGCCAYAGTCCCTCTAA 3391027 Score = 333 bits (368), Expect = 4e-89 Identities = 229/257 (89%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| | Sbjct 3391642 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGAAATT-C 3391585 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||| ||||||||||||||||||||||||||||||| |||||||||| | |||||| Sbjct 3391584 TTCGTTGAGGACCAACAATTGCAATGATCTATCCCCATCAYGATGAAATTTTACAAGATT 3391525 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||| |||||||||| ||||||||||| ||||||||||||||| |||||||| Sbjct 3391524 ACCATRGCCTRTCGGCCAAGGCTATAGACTCGTTAAATACATCAGTGTAGTGCGCGTGCA 3391465 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 |||||||||||||||||| |||||| |||| ||||||||||||| |||||||||| ||| Sbjct 3391464 GCCCAGAACATCTAAGGGYATCACAAACCTATTATTGCCTCAAAATTCCGTGGCCKAAAC 3391405 Query 240 GGCCAT-CTCCCTCGAA 255 | |||| |||||| || Sbjct 3391404 GACCATAGTCCCTCTAA 3391388 >seq3 Length=19547260 Score = 77.0 bits (84), Expect = 5e-12 Identities = 49/52 (94%), Gaps = 1/52 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTA 52 |||||||||| ||||||||||| ||||||||| ||||||||||||||||||| Sbjct 9687892 GTACAAAGGGTAGGGACGTAGTGAACGCGAGC-TGATGACTCGCGCTTACTA 9687942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999847015